Analysis of interatomic Contacts of Structural Units in PDB entry:
9GH4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GH4 entry

There are 3 chains in PDB entry 9GH4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 25GLY 274
B
 ALA 25GLY 274
C
 ALA 25GLY 274
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 9GH4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
231 238Right-handed alpha
Helix 2
AA2
A
245 250Right-handed alpha
Helix 3
AA3
A
254 261Right-handed alpha
Helix 4
AA4
A
268 273Right-handed alpha
Helix 5
AA5
B
231 238Right-handed alpha
Helix 6
AA6
B
245 250Right-handed alpha
Helix 7
AA7
B
254 261Right-handed alpha
Helix 8
AA8
B
268 273Right-handed alpha
Helix 9
AA9
C
231 238Right-handed alpha
Helix 10
AB1
C
245 250Right-handed alpha
Helix 11
AB2
C
254 261Right-handed alpha
Helix 12
AB3
C
268 273Right-handed alpha
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There are 9 sheets in PDB entry 9GH4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 31first strand
Strand 2
A
38 42anti-parallel
Strand 3
A
52 56parallel
Strand 4
A
66 70parallel
Strand 5
A
80 84parallel
Strand 6
A
93 98parallel
Strand 7
A
107 116parallel
Strand 8
A
122 130parallel
Strand 9
A
150 151parallel
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There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 46first strand
Strand 2
A
59 60parallel
Strand 3
A
73 74parallel
Strand 4
A
87 88parallel
Strand 5
A
101 102parallel
Strand 6
A
107 116parallel
Strand 7
A
122 130parallel
Strand 8
A
136 140parallel
Strand 9
A
157 161parallel
Strand 10
A
173 175parallel
Strand 11
A
189 191parallel
Strand 12
A
202 204parallel
Strand 13
B
213 215parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 165first strand
Strand 2
A
180 181parallel
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There are 13 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 215first strand
Strand 2
C
202 204parallel
Strand 3
C
189 191parallel
Strand 4
C
173 175parallel
Strand 5
C
157 161parallel
Strand 6
C
136 140parallel
Strand 7
C
122 130parallel
Strand 8
C
107 116parallel
Strand 9
C
101 102parallel
Strand 10
C
87 88parallel
Strand 11
C
73 74parallel
Strand 12
C
59 60parallel
Strand 13
C
45 46parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
28 31first strand
Strand 2
C
38 42anti-parallel
Strand 3
C
52 56parallel
Strand 4
C
66 70parallel
Strand 5
C
80 84parallel
Strand 6
C
93 98parallel
Strand 7
C
107 116parallel
Strand 8
C
122 130parallel
Strand 9
C
150 151parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 31first strand
Strand 2
B
38 42anti-parallel
Strand 3
B
52 56parallel
Strand 4
B
66 70parallel
Strand 5
B
80 84parallel
Strand 6
B
93 98parallel
Strand 7
B
107 116parallel
Strand 8
B
122 130parallel
Strand 9
B
150 151parallel
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There are 13 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 46first strand
Strand 2
B
59 60parallel
Strand 3
B
73 74parallel
Strand 4
B
87 88parallel
Strand 5
B
101 102parallel
Strand 6
B
107 116parallel
Strand 7
B
122 130parallel
Strand 8
B
136 140parallel
Strand 9
B
157 161parallel
Strand 10
B
173 175parallel
Strand 11
B
189 191parallel
Strand 12
B
202 204parallel
Strand 13
C
213 215parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 165first strand
Strand 2
B
180 181parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
164 165first strand
Strand 2
C
180 181parallel
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