Analysis of interatomic Contacts of Structural Units in PDB entry:
9GH5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GH5 entry

There are 6 chains in PDB entry 9GH5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 26	GLY 274
B	ALA 26	GLY 274
C	ALA 26	GLY 274
D	GLN 35	THR 234
E	GLN 35	THR 234
F	GLN 35	THR 234

There are 21 helices in PDB entry 9GH5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	231	238	Right-handed alpha
Helix 2	AA2	A	245	250	Right-handed alpha
Helix 3	AA3	A	254	261	Right-handed alpha
Helix 4	AA4	A	268	273	Right-handed alpha
Helix 5	AA5	B	231	238	Right-handed alpha
Helix 6	AA6	B	245	250	Right-handed alpha
Helix 7	AA7	B	254	261	Right-handed alpha
Helix 8	AA8	B	265	273	Right-handed alpha
Helix 9	AA9	C	231	238	Right-handed alpha
Helix 10	AB1	C	245	250	Right-handed alpha
Helix 11	AB2	C	254	259	Right-handed alpha
Helix 12	AB3	C	268	273	Right-handed alpha
Helix 13	AB4	D	74	76	Right-handed 310
Helix 14	AB5	D	113	117	Right-handed 310
Helix 15	AB6	D	206	210	Right-handed 310
Helix 16	AB7	E	74	76	Right-handed 310
Helix 17	AB8	E	113	117	Right-handed 310
Helix 18	AB9	E	206	210	Right-handed 310
Helix 19	AC1	F	74	76	Right-handed 310
Helix 20	AC2	F	113	117	Right-handed 310
Helix 21	AC3	F	206	210	Right-handed 310

There are 21 sheets in PDB entry 9GH5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	31	first strand
Strand 2	A	38	42	anti-parallel
Strand 3	A	52	56	parallel
Strand 4	A	66	70	parallel
Strand 5	A	80	84	parallel
Strand 6	A	93	98	parallel
Strand 7	A	107	116	parallel
Strand 8	A	122	130	parallel
Strand 9	A	150	151	parallel

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There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	46	first strand
Strand 2	A	59	60	parallel
Strand 3	A	73	74	parallel
Strand 4	A	87	88	parallel
Strand 5	A	101	102	parallel
Strand 6	A	107	116	parallel
Strand 7	A	122	130	parallel
Strand 8	A	136	140	parallel
Strand 9	A	157	161	parallel
Strand 10	A	172	175	parallel
Strand 11	A	188	191	parallel
Strand 12	A	202	204	parallel
Strand 13	B	213	215	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	165	first strand
Strand 2	A	180	181	parallel

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There are 13 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	215	first strand
Strand 2	C	202	204	parallel
Strand 3	C	188	191	parallel
Strand 4	C	172	175	parallel
Strand 5	C	157	161	parallel
Strand 6	C	136	140	parallel
Strand 7	C	122	130	parallel
Strand 8	C	107	116	parallel
Strand 9	C	101	102	parallel
Strand 10	C	87	88	parallel
Strand 11	C	73	74	parallel
Strand 12	C	59	60	parallel
Strand 13	C	45	46	parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	31	first strand
Strand 2	C	38	42	anti-parallel
Strand 3	C	52	56	parallel
Strand 4	C	66	70	parallel
Strand 5	C	80	84	parallel
Strand 6	C	93	98	parallel
Strand 7	C	107	116	parallel
Strand 8	C	122	130	parallel
Strand 9	C	150	151	parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	31	first strand
Strand 2	B	38	42	anti-parallel
Strand 3	B	52	56	parallel
Strand 4	B	66	70	parallel
Strand 5	B	80	84	parallel
Strand 6	B	93	98	parallel
Strand 7	B	107	116	parallel
Strand 8	B	122	130	parallel
Strand 9	B	150	151	parallel

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There are 13 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	46	first strand
Strand 2	B	59	60	parallel
Strand 3	B	73	74	parallel
Strand 4	B	87	88	parallel
Strand 5	B	101	102	parallel
Strand 6	B	107	116	parallel
Strand 7	B	122	130	parallel
Strand 8	B	136	140	parallel
Strand 9	B	157	161	parallel
Strand 10	B	172	175	parallel
Strand 11	B	188	191	parallel
Strand 12	B	202	204	parallel
Strand 13	C	213	215	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	165	first strand
Strand 2	B	180	181	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	165	first strand
Strand 2	C	180	181	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	41	first strand
Strand 2	D	51	56	anti-parallel
Strand 3	D	107	109	anti-parallel
Strand 4	D	99	101	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	46	first strand
Strand 2	D	131	141	parallel
Strand 3	D	118	126	anti-parallel
Strand 4	D	62	69	anti-parallel
Strand 5	D	78	83	anti-parallel
Strand 6	D	88	91	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	151	first strand
Strand 2	D	164	167	anti-parallel
Strand 3	D	199	202	anti-parallel
Strand 4	D	191	194	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	183	184	first strand
Strand 2	D	175	180	anti-parallel
Strand 3	D	214	218	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	37	41	first strand
Strand 2	E	51	56	anti-parallel
Strand 3	E	107	109	anti-parallel
Strand 4	E	99	101	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	44	46	first strand
Strand 2	E	131	141	parallel
Strand 3	E	118	126	anti-parallel
Strand 4	E	62	69	anti-parallel
Strand 5	E	78	83	anti-parallel
Strand 6	E	88	91	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	149	151	first strand
Strand 2	E	164	167	anti-parallel
Strand 3	E	199	202	anti-parallel
Strand 4	E	191	194	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	183	184	first strand
Strand 2	E	175	180	anti-parallel
Strand 3	E	213	218	anti-parallel
Strand 4	E	223	225	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	37	41	first strand
Strand 2	F	51	56	anti-parallel
Strand 3	F	107	109	anti-parallel
Strand 4	F	99	101	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	44	46	first strand
Strand 2	F	131	141	parallel
Strand 3	F	118	126	anti-parallel
Strand 4	F	62	69	anti-parallel
Strand 5	F	78	83	anti-parallel
Strand 6	F	88	91	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	149	151	first strand
Strand 2	F	164	167	anti-parallel
Strand 3	F	199	202	anti-parallel
Strand 4	F	191	194	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	183	184	first strand
Strand 2	F	175	180	anti-parallel
Strand 3	F	213	218	anti-parallel
Strand 4	F	223	225	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GH5

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GH5