Analysis of interatomic Contacts of Structural Units in PDB entry:
9GH9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GH9 entry

There are 4 chains in PDB entry 9GH9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 9ALA 288
A
 GLY 290HIS 461
B
 LYS 9ALA 288
B
 GLY 290HIS 461
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 9GH9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 19Right-handed alpha
Helix 2
AA2
A
25 30Right-handed 310
Helix 3
AA3
A
57 62Right-handed alpha
Helix 4
AA4
A
69 84Right-handed alpha
Helix 5
AA5
A
93 107Right-handed alpha
Helix 6
AA6
A
119 138Right-handed alpha
Helix 7
AA7
A
157 164Right-handed alpha
Helix 8
AA8
A
166 171Right-handed alpha
Helix 9
AA9
A
187 191Right-handed 310
Helix 10
AB1
A
197 217Right-handed alpha
Helix 11
AB2
A
241 254Right-handed alpha
Helix 12
AB3
A
273 279Right-handed 310
Helix 13
AB4
A
288 293Right-handed 310
Helix 14
AB5
A
305 309Right-handed alpha
Helix 15
AB6
A
310 313Right-handed 310
Helix 16
AB7
A
327 345Right-handed alpha
Helix 17
AB8
A
345 363Right-handed alpha
Helix 18
AB9
A
364 367Right-handed 310
Helix 19
AC1
A
395 403Right-handed alpha
Helix 20
AC2
A
405 414Right-handed alpha
Helix 21
AC3
A
437 458Right-handed alpha
Helix 22
AC4
B
11 19Right-handed alpha
Helix 23
AC5
B
25 30Right-handed 310
Helix 24
AC6
B
57 62Right-handed alpha
Helix 25
AC7
B
69 84Right-handed alpha
Helix 26
AC8
B
93 107Right-handed alpha
Helix 27
AC9
B
119 138Right-handed alpha
Helix 28
AD1
B
157 164Right-handed alpha
Helix 29
AD2
B
166 174Right-handed 310
Helix 30
AD3
B
187 191Right-handed 310
Helix 31
AD4
B
197 217Right-handed alpha
Helix 32
AD5
B
241 254Right-handed alpha
Helix 33
AD6
B
274 279Right-handed alpha
Helix 34
AD7
B
288 293Right-handed 310
Helix 35
AD8
B
305 309Right-handed alpha
Helix 36
AD9
B
310 313Right-handed 310
Helix 37
AE1
B
327 345Right-handed alpha
Helix 38
AE2
B
345 363Right-handed alpha
Helix 39
AE3
B
364 367Right-handed 310
Helix 40
AE4
B
395 403Right-handed alpha
Helix 41
AE5
B
405 414Right-handed alpha
Helix 42
AE6
B
437 458Right-handed alpha
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There are 6 sheets in PDB entry 9GH9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 41first strand
Strand 2
A
44 47anti-parallel
Strand 3
A
52 55anti-parallel
Strand 4
A
416 417parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 117first strand
Strand 2
A
299 304anti-parallel
Strand 3
A
284 287anti-parallel
Strand 4
A
256 260parallel
Strand 5
A
221 226parallel
Strand 6
A
145 149parallel
Strand 7
A
180 183parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 376first strand
Strand 2
A
379 384anti-parallel
Strand 3
A
427 430anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 41first strand
Strand 2
B
44 47anti-parallel
Strand 3
B
52 55anti-parallel
Strand 4
B
416 417parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 117first strand
Strand 2
B
299 304anti-parallel
Strand 3
B
284 287anti-parallel
Strand 4
B
256 260parallel
Strand 5
B
221 226parallel
Strand 6
B
145 149parallel
Strand 7
B
180 183parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
370 376first strand
Strand 2
B
379 384anti-parallel
Strand 3
B
427 430anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il