Analysis of interatomic Contacts of Structural Units in PDB entry:
9GHI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GHI entry

There are 4 chains in PDB entry 9GHI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 60	SER 251
B	PHE 265	GLY 427
H	GLN 1	ASP 214
L	GLY 0	LYS 92

There are 23 helices in PDB entry 9GHI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	77	82	Right-handed alpha
Helix 2	AA2	A	128	135	Right-handed 310
Helix 3	AA3	A	138	153	Right-handed alpha
Helix 4	AA4	A	182	184	Right-handed 310
Helix 5	AA5	A	185	200	Right-handed alpha
Helix 6	AA6	A	222	226	Right-handed 310
Helix 7	AA7	A	230	235	Right-handed alpha
Helix 8	AA8	A	240	251	Right-handed alpha
Helix 9	AA9	B	284	288	Right-handed 310
Helix 10	AB1	B	297	306	Right-handed alpha
Helix 11	AB2	B	310	325	Right-handed alpha
Helix 12	AB3	B	343	347	Right-handed 310
Helix 13	AB4	B	349	362	Right-handed alpha
Helix 14	AB5	B	398	401	Right-handed 310
Helix 15	AB6	B	402	426	Right-handed alpha
Helix 16	AB7	H	28	32	Right-handed 310
Helix 17	AB8	H	83	87	Right-handed 310
Helix 18	AB9	H	156	158	Right-handed 310
Helix 19	AC1	H	200	203	Right-handed 310
Helix 20	AC2	L	79	83	Right-handed 310
Helix 21	AC3	L	121	128	Right-handed alpha
Helix 22	AC4	L	183	188	Right-handed alpha
Helix 23	AC5	L	212	214	Right-handed 310

There are 15 sheets in PDB entry 9GHI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	74	first strand
Strand 2	B	371	377	anti-parallel
Strand 3	B	387	388	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	93	first strand
Strand 2	A	98	103	anti-parallel
Strand 3	A	106	113	anti-parallel
Strand 4	A	214	219	anti-parallel
Strand 5	A	175	178	anti-parallel
Strand 6	A	162	164	anti-parallel
Strand 7	A	124	126	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	283	first strand
Strand 2	B	294	295	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	391	392	first strand
Strand 2	B	395	396	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	95	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	95	anti-parallel
Strand 4	H	100	103	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	120	124	first strand
Strand 2	H	135	145	anti-parallel
Strand 3	H	174	184	anti-parallel
Strand 4	H	163	165	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	120	124	first strand
Strand 2	H	135	145	anti-parallel
Strand 3	H	174	184	anti-parallel
Strand 4	H	169	171	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	151	154	first strand
Strand 2	H	193	199	anti-parallel
Strand 3	H	204	210	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	5	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	44	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	97	98	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	129	139	anti-parallel
Strand 3	L	173	182	anti-parallel
Strand 4	L	159	163	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	153	155	first strand
Strand 2	L	144	150	anti-parallel
Strand 3	L	191	198	anti-parallel
Strand 4	L	201	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GHI

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GHI