Analysis of interatomic Contacts of Structural Units in PDB entry:
9GHJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GHJ entry

There are 4 chains in PDB entry 9GHJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 60	GLY 240
B	PHE 253	GLU 410
H	GLY -3	ARG 213
L	GLY 0	ARG 211

There are 24 helices in PDB entry 9GHJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	76	83	Right-handed alpha
Helix 2	AA2	A	128	135	Right-handed 310
Helix 3	AA3	A	138	153	Right-handed alpha
Helix 4	AA4	A	182	184	Right-handed 310
Helix 5	AA5	A	185	200	Right-handed alpha
Helix 6	AA6	A	229	240	Right-handed alpha
Helix 7	AA7	B	273	277	Right-handed 310
Helix 8	AA8	B	286	291	Right-handed alpha
Helix 9	AA9	B	292	294	Right-handed 310
Helix 10	AB1	B	299	318	Right-handed alpha
Helix 11	AB2	B	332	337	Right-handed alpha
Helix 12	AB3	B	338	351	Right-handed alpha
Helix 13	AB4	B	388	390	Right-handed 310
Helix 14	AB5	B	391	410	Right-handed alpha
Helix 15	AB6	H	28	32	Right-handed 310
Helix 16	AB7	H	52	54	Right-handed 310
Helix 17	AB8	H	61	64	Right-handed 310
Helix 18	AB9	H	72	72	Right-handed 310
Helix 19	AC1	H	83	87	Right-handed 310
Helix 20	AC2	H	156	158	Right-handed 310
Helix 21	AC3	H	159	161	Right-handed 310
Helix 22	AC4	L	79	83	Right-handed 310
Helix 23	AC5	L	121	128	Right-handed alpha
Helix 24	AC6	L	183	189	Right-handed alpha

There are 15 sheets in PDB entry 9GHJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	63	first strand
Strand 2	A	69	74	anti-parallel
Strand 3	B	360	365	anti-parallel
Strand 4	B	376	377	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	93	first strand
Strand 2	A	98	103	anti-parallel
Strand 3	A	106	113	anti-parallel
Strand 4	A	214	219	anti-parallel
Strand 5	A	175	178	anti-parallel
Strand 6	A	162	164	anti-parallel
Strand 7	A	124	126	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	272	first strand
Strand 2	B	283	285	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	380	381	first strand
Strand 2	B	384	385	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	0	5	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	74	79	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	98	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	98	anti-parallel
Strand 4	H	100	103	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	120	124	first strand
Strand 2	H	135	145	anti-parallel
Strand 3	H	174	184	anti-parallel
Strand 4	H	163	165	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	120	124	first strand
Strand 2	H	135	145	anti-parallel
Strand 3	H	174	184	anti-parallel
Strand 4	H	169	171	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	151	154	first strand
Strand 2	H	194	199	anti-parallel
Strand 3	H	204	209	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	5	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	97	98	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	129	139	anti-parallel
Strand 3	L	173	182	anti-parallel
Strand 4	L	159	163	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	153	155	first strand
Strand 2	L	145	150	anti-parallel
Strand 3	L	192	197	anti-parallel
Strand 4	L	205	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GHJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GHJ