Analysis of interatomic Contacts of Structural Units in PDB entry:
9GHL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GHL entry

There are 6 chains in PDB entry 9GHL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 2	LEU 226
B	LEU 2	LEU 226
C	LEU 2	LEU 226
D	LEU 2	LEU 226
E	LEU 2	LEU 226
F	LEU 2	HIS 96

There are 45 helices in PDB entry 9GHL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	23	Right-handed alpha
Helix 2	AA2	A	30	32	Right-handed 310
Helix 3	AA3	A	50	66	Right-handed alpha
Helix 4	AA4	A	67	75	Right-handed alpha
Helix 5	AA5	A	123	125	Right-handed 310
Helix 6	AA6	A	182	203	Right-handed alpha
Helix 7	AA7	A	206	224	Right-handed alpha
Helix 8	AA8	B	10	23	Right-handed alpha
Helix 9	AA9	B	30	33	Right-handed 310
Helix 10	AB1	B	36	39	Right-handed 310
Helix 11	AB2	B	50	66	Right-handed alpha
Helix 12	AB3	B	67	75	Right-handed alpha
Helix 13	AB4	B	123	125	Right-handed 310
Helix 14	AB5	B	182	203	Right-handed alpha
Helix 15	AB6	B	206	224	Right-handed alpha
Helix 16	AB7	C	10	24	Right-handed alpha
Helix 17	AB8	C	30	32	Right-handed 310
Helix 18	AB9	C	36	39	Right-handed 310
Helix 19	AC1	C	50	66	Right-handed alpha
Helix 20	AC2	C	67	75	Right-handed alpha
Helix 21	AC3	C	123	125	Right-handed 310
Helix 22	AC4	C	182	203	Right-handed alpha
Helix 23	AC5	C	206	224	Right-handed alpha
Helix 24	AC6	D	10	24	Right-handed alpha
Helix 25	AC7	D	30	32	Right-handed 310
Helix 26	AC8	D	50	66	Right-handed alpha
Helix 27	AC9	D	67	75	Right-handed alpha
Helix 28	AD1	D	123	127	Right-handed 310
Helix 29	AD2	D	182	203	Right-handed alpha
Helix 30	AD3	D	206	224	Right-handed alpha
Helix 31	AD4	E	10	23	Right-handed alpha
Helix 32	AD5	E	30	32	Right-handed 310
Helix 33	AD6	E	50	66	Right-handed alpha
Helix 34	AD7	E	67	75	Right-handed alpha
Helix 35	AD8	E	123	127	Right-handed 310
Helix 36	AD9	E	182	203	Right-handed alpha
Helix 37	AE1	E	206	224	Right-handed alpha
Helix 38	AE2	F	10	24	Right-handed alpha
Helix 39	AE3	F	30	32	Right-handed 310
Helix 40	AE4	F	34	40	Right-handed alpha
Helix 41	AE5	F	50	66	Right-handed alpha
Helix 42	AE6	F	67	75	Right-handed alpha
Helix 43	AE7	F	123	127	Right-handed 310
Helix 44	AE8	F	182	203	Right-handed alpha
Helix 45	AE9	F	206	224	Right-handed alpha

There are 26 sheets in PDB entry 9GHL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	5	first strand
Strand 2	A	150	154	anti-parallel
Strand 3	A	115	120	anti-parallel
Strand 4	A	164	178	anti-parallel
Strand 5	A	76	79	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	28	first strand
Strand 2	A	44	45	anti-parallel
Strand 3	A	83	88	anti-parallel
Strand 4	A	164	178	anti-parallel
Strand 5	A	127	129	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	42	first strand
Strand 2	A	92	96	anti-parallel
Strand 3	A	158	161	anti-parallel
Strand 4	A	132	135	anti-parallel
Strand 5	A	140	143	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	104	first strand
Strand 2	A	109	112	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	5	first strand
Strand 2	B	150	154	anti-parallel
Strand 3	B	115	120	anti-parallel
Strand 4	B	164	178	anti-parallel
Strand 5	B	76	79	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	28	first strand
Strand 2	B	44	45	anti-parallel
Strand 3	B	83	88	anti-parallel
Strand 4	B	164	178	anti-parallel
Strand 5	B	127	129	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	42	first strand
Strand 2	B	92	96	anti-parallel
Strand 3	B	158	161	anti-parallel
Strand 4	B	132	135	anti-parallel
Strand 5	B	140	143	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	104	first strand
Strand 2	B	109	112	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	5	first strand
Strand 2	C	150	154	anti-parallel
Strand 3	C	115	120	anti-parallel
Strand 4	C	164	178	anti-parallel
Strand 5	C	76	79	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	28	first strand
Strand 2	C	44	45	anti-parallel
Strand 3	C	83	88	anti-parallel
Strand 4	C	164	178	anti-parallel
Strand 5	C	127	129	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	42	first strand
Strand 2	C	92	96	anti-parallel
Strand 3	C	158	161	anti-parallel
Strand 4	C	132	135	anti-parallel
Strand 5	C	140	143	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	104	first strand
Strand 2	C	109	112	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	5	first strand
Strand 2	D	150	154	anti-parallel
Strand 3	D	115	120	anti-parallel
Strand 4	D	168	178	anti-parallel
Strand 5	D	83	88	anti-parallel
Strand 6	D	44	45	anti-parallel
Strand 7	D	27	28	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	5	first strand
Strand 2	D	150	154	anti-parallel
Strand 3	D	115	120	anti-parallel
Strand 4	D	168	178	anti-parallel
Strand 5	D	76	79	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	42	first strand
Strand 2	D	92	96	anti-parallel
Strand 3	D	158	161	anti-parallel
Strand 4	D	132	135	anti-parallel
Strand 5	D	140	143	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	101	103	first strand
Strand 2	D	110	112	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	129	first strand
Strand 2	D	164	166	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	5	first strand
Strand 2	E	150	154	anti-parallel
Strand 3	E	115	120	anti-parallel
Strand 4	E	168	178	anti-parallel
Strand 5	E	83	88	anti-parallel
Strand 6	E	44	45	anti-parallel
Strand 7	E	27	28	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	5	first strand
Strand 2	E	150	154	anti-parallel
Strand 3	E	115	120	anti-parallel
Strand 4	E	168	178	anti-parallel
Strand 5	E	76	79	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	41	42	first strand
Strand 2	E	92	96	anti-parallel
Strand 3	E	158	161	anti-parallel
Strand 4	E	132	135	anti-parallel
Strand 5	E	140	143	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	101	103	first strand
Strand 2	E	110	112	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	5	first strand
Strand 2	F	150	154	anti-parallel
Strand 3	F	115	120	anti-parallel
Strand 4	F	168	178	anti-parallel
Strand 5	F	83	88	anti-parallel
Strand 6	F	44	45	anti-parallel
Strand 7	F	27	28	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	5	first strand
Strand 2	F	150	154	anti-parallel
Strand 3	F	115	120	anti-parallel
Strand 4	F	168	178	anti-parallel
Strand 5	F	76	79	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	41	42	first strand
Strand 2	F	92	96	anti-parallel
Strand 3	F	158	161	anti-parallel
Strand 4	F	132	135	anti-parallel
Strand 5	F	140	143	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	101	103	first strand
Strand 2	F	110	112	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	128	129	first strand
Strand 2	F	164	166	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GHL

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GHL