Analysis of interatomic Contacts of Structural Units in PDB entry:
9GI5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GI5 entry

There are 4 chains in PDB entry 9GI5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 3	ILE 350
B	ASP 3	ILE 350
C	ASP 3	ILE 350
D	GLU 4	ILE 179

There are 61 helices in PDB entry 9GI5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	8	Right-handed 310
Helix 2	AA2	A	11	18	Right-handed alpha
Helix 3	AA3	A	24	28	Right-handed 310
Helix 4	AA4	A	53	55	Right-handed 310
Helix 5	AA5	A	57	71	Right-handed alpha
Helix 6	AA6	A	82	98	Right-handed alpha
Helix 7	AA7	A	100	105	Right-handed alpha
Helix 8	AA8	A	106	108	Right-handed 310
Helix 9	AA9	A	112	114	Right-handed 310
Helix 10	AB1	A	145	149	Right-handed 310
Helix 11	AB2	A	150	154	Right-handed 310
Helix 12	AB3	A	160	187	Right-handed alpha
Helix 13	AB4	A	194	198	Right-handed 310
Helix 14	AB5	A	266	273	Right-handed alpha
Helix 15	AB6	A	310	314	Right-handed 310
Helix 16	AB7	A	326	340	Right-handed alpha
Helix 17	AB8	A	344	349	Right-handed alpha
Helix 18	AB9	B	3	8	Right-handed 310
Helix 19	AC1	B	11	19	Right-handed alpha
Helix 20	AC2	B	24	28	Right-handed 310
Helix 21	AC3	B	57	71	Right-handed alpha
Helix 22	AC4	B	82	98	Right-handed alpha
Helix 23	AC5	B	100	105	Right-handed alpha
Helix 24	AC6	B	106	108	Right-handed 310
Helix 25	AC7	B	112	114	Right-handed 310
Helix 26	AC8	B	150	154	Right-handed 310
Helix 27	AC9	B	160	188	Right-handed alpha
Helix 28	AD1	B	191	199	Right-handed alpha
Helix 29	AD2	B	266	273	Right-handed alpha
Helix 30	AD3	B	310	314	Right-handed 310
Helix 31	AD4	B	326	340	Right-handed alpha
Helix 32	AD5	B	343	349	Right-handed alpha
Helix 33	AD6	C	4	8	Right-handed 310
Helix 34	AD7	C	11	17	Right-handed alpha
Helix 35	AD8	C	53	55	Right-handed 310
Helix 36	AD9	C	57	71	Right-handed alpha
Helix 37	AE1	C	82	98	Right-handed alpha
Helix 38	AE2	C	100	106	Right-handed alpha
Helix 39	AE3	C	112	114	Right-handed 310
Helix 40	AE4	C	145	149	Right-handed 310
Helix 41	AE5	C	150	154	Right-handed 310
Helix 42	AE6	C	160	187	Right-handed alpha
Helix 43	AE7	C	194	199	Right-handed alpha
Helix 44	AE8	C	266	273	Right-handed alpha
Helix 45	AE9	C	310	314	Right-handed 310
Helix 46	AF1	C	326	340	Right-handed alpha
Helix 47	AF2	C	343	349	Right-handed alpha
Helix 48	AF3	D	11	18	Right-handed alpha
Helix 49	AF4	D	24	28	Right-handed 310
Helix 50	AF5	D	53	55	Right-handed 310
Helix 51	AF6	D	57	71	Right-handed alpha
Helix 52	AF7	D	82	98	Right-handed alpha
Helix 53	AF8	D	100	106	Right-handed alpha
Helix 54	AF9	D	112	114	Right-handed 310
Helix 55	AG1	D	145	149	Right-handed 310
Helix 56	AG2	D	150	154	Right-handed 310
Helix 57	AG3	D	160	187	Right-handed alpha
Helix 58	AG4	D	266	273	Right-handed alpha
Helix 59	AG5	D	310	314	Right-handed 310
Helix 60	AG6	D	326	341	Right-handed alpha
Helix 61	AG7	D	343	349	Right-handed alpha

There are 12 sheets in PDB entry 9GI5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	51	first strand
Strand 2	A	73	77	parallel
Strand 3	A	261	265	anti-parallel
Strand 4	A	231	236	anti-parallel
Strand 5	A	292	299	anti-parallel
Strand 6	A	203	210	anti-parallel
Strand 7	A	137	144	anti-parallel
Strand 8	A	120	122	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	111	first strand
Strand 2	A	115	116	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	225	first strand
Strand 2	A	282	284	anti-parallel
Strand 3	A	243	247	anti-parallel
Strand 4	A	250	253	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	42	first strand
Strand 2	B	250	253	parallel
Strand 3	B	243	247	anti-parallel
Strand 4	B	282	284	anti-parallel
Strand 5	B	222	225	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	51	first strand
Strand 2	B	73	77	parallel
Strand 3	B	261	265	anti-parallel
Strand 4	B	231	236	anti-parallel
Strand 5	B	292	299	anti-parallel
Strand 6	B	203	210	anti-parallel
Strand 7	B	137	144	anti-parallel
Strand 8	B	120	122	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	111	first strand
Strand 2	B	115	116	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	42	first strand
Strand 2	C	250	253	parallel
Strand 3	C	243	247	anti-parallel
Strand 4	C	281	284	anti-parallel
Strand 5	C	222	225	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	51	first strand
Strand 2	C	73	77	parallel
Strand 3	C	261	265	anti-parallel
Strand 4	C	231	236	anti-parallel
Strand 5	C	292	299	anti-parallel
Strand 6	C	203	210	anti-parallel
Strand 7	C	137	144	anti-parallel
Strand 8	C	120	122	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	111	first strand
Strand 2	C	115	116	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	42	first strand
Strand 2	D	250	253	parallel
Strand 3	D	243	247	anti-parallel
Strand 4	D	281	284	anti-parallel
Strand 5	D	222	226	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	51	first strand
Strand 2	D	73	77	parallel
Strand 3	D	261	265	anti-parallel
Strand 4	D	231	236	anti-parallel
Strand 5	D	292	299	anti-parallel
Strand 6	D	203	210	anti-parallel
Strand 7	D	137	144	anti-parallel
Strand 8	D	120	122	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	110	111	first strand
Strand 2	D	115	116	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GI5

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GI5