Analysis of interatomic Contacts of Structural Units in PDB entry:
9GIA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GIA entry

There are 2 chains in PDB entry 9GIA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 19TYR 269
B
 SER 19TYR 269
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9GIA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 63Right-handed alpha
Helix 2
AA2
A
77 87Right-handed alpha
Helix 3
AA3
A
90 92Right-handed 310
Helix 4
AA4
A
112 117Right-handed alpha
Helix 5
AA5
A
131 136Right-handed 310
Helix 6
AA6
A
137 142Right-handed alpha
Helix 7
AA7
A
146 166Right-handed alpha
Helix 8
AA8
A
179 193Right-handed alpha
Helix 9
AA9
A
194 197Right-handed 310
Helix 10
AB1
A
201 210Right-handed alpha
Helix 11
AB2
A
210 226Right-handed alpha
Helix 12
AB3
A
239 262Right-handed alpha
Helix 13
AB4
B
24 29Right-handed alpha
Helix 14
AB5
B
37 63Right-handed alpha
Helix 15
AB6
B
77 87Right-handed alpha
Helix 16
AB7
B
90 92Right-handed 310
Helix 17
AB8
B
112 117Right-handed alpha
Helix 18
AB9
B
131 136Right-handed 310
Helix 19
AC1
B
137 142Right-handed alpha
Helix 20
AC2
B
146 166Right-handed alpha
Helix 21
AC3
B
179 193Right-handed alpha
Helix 22
AC4
B
201 210Right-handed alpha
Helix 23
AC5
B
210 225Right-handed alpha
Helix 24
AC6
B
239 262Right-handed alpha
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There are 2 sheets in PDB entry 9GIA. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 97first strand
Strand 2
A
125 128parallel
Strand 3
A
65 72parallel
Strand 4
A
169 177parallel
Strand 5
A
232 236parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 97first strand
Strand 2
B
125 128parallel
Strand 3
B
65 72parallel
Strand 4
B
169 177parallel
Strand 5
B
232 236parallel
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