Analysis of interatomic Contacts of Structural Units in PDB entry:
9GIM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GIM entry

There is 1 chain in PDB entry 9GIM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 9GLN 949
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 9GIM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
232 252Right-handed alpha
Helix 2
AA2
A
576 588Right-handed alpha
Helix 3
AA3
A
606 613Right-handed alpha
Helix 4
AA4
A
620 626Right-handed 310
Helix 5
AA5
A
642 656Right-handed alpha
Helix 6
AA6
A
657 661Right-handed 310
Helix 7
AA7
A
678 683Right-handed alpha
Helix 8
AA8
A
685 704Right-handed alpha
Helix 9
AA9
A
712 720Right-handed alpha
Helix 10
AB1
A
725 730Right-handed alpha
Helix 11
AB2
A
733 746Right-handed alpha
Helix 12
AB3
A
747 751Right-handed 310
Helix 13
AB4
A
773 777Right-handed 310
Helix 14
AB5
A
783 796Right-handed alpha
Helix 15
AB6
A
800 813Right-handed alpha
Helix 16
AB7
A
816 820Right-handed 310
Helix 17
AB8
A
827 834Right-handed alpha
Helix 18
AB9
A
839 846Right-handed alpha
Helix 19
AC1
A
857 870Right-handed alpha
Helix 20
AC2
A
871 884Right-handed alpha
Helix 21
AC3
A
892 895Right-handed 310
Helix 22
AC4
A
933 947Right-handed alpha
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There are 9 sheets in PDB entry 9GIM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 82first strand
Strand 2
A
20 30anti-parallel
Strand 3
A
145 151anti-parallel
Strand 4
A
129 132anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 63first strand
Strand 2
A
43 51anti-parallel
Strand 3
A
87 95anti-parallel
Strand 4
A
104 111anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 203first strand
Strand 2
A
209 213anti-parallel
Strand 3
A
218 220anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
534 539first strand
Strand 2
A
543 548anti-parallel
Strand 3
A
553 554anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
598 602first strand
Strand 2
A
628 632parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
663 665first strand
Strand 2
A
673 675anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
757 761first strand
Strand 2
A
764 768anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
847 849first strand
Strand 2
A
905 908parallel
Strand 3
A
925 927parallel
Strand 4
A
918 920anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
897 898first strand
Strand 2
A
901 902anti-parallel
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