Analysis of interatomic Contacts of Structural Units in PDB entry:
9GIZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GIZ entry

There are 2 chains in PDB entry 9GIZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 3GLU 434
B
 ARG 3GLU 434
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 9GIZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 16Right-handed alpha
Helix 2
AA2
A
20 35Right-handed alpha
Helix 3
AA3
A
46 63Right-handed alpha
Helix 4
AA4
A
94 98Right-handed 310
Helix 5
AA5
A
103 112Right-handed alpha
Helix 6
AA6
A
155 162Right-handed alpha
Helix 7
AA7
A
177 185Right-handed alpha
Helix 8
AA8
A
222 234Right-handed alpha
Helix 9
AA9
A
260 277Right-handed alpha
Helix 10
AB1
A
290 306Right-handed alpha
Helix 11
AB2
A
310 316Right-handed alpha
Helix 12
AB3
A
319 341Right-handed alpha
Helix 13
AB4
A
379 381Right-handed 310
Helix 14
AB5
A
382 390Right-handed alpha
Helix 15
AB6
A
418 433Right-handed alpha
Helix 16
AB7
B
6 16Right-handed alpha
Helix 17
AB8
B
20 37Right-handed alpha
Helix 18
AB9
B
46 63Right-handed alpha
Helix 19
AC1
B
103 112Right-handed alpha
Helix 20
AC2
B
155 162Right-handed alpha
Helix 21
AC3
B
177 185Right-handed alpha
Helix 22
AC4
B
222 234Right-handed alpha
Helix 23
AC5
B
260 277Right-handed alpha
Helix 24
AC6
B
290 309Right-handed alpha
Helix 25
AC7
B
310 317Right-handed 310
Helix 26
AC8
B
319 341Right-handed alpha
Helix 27
AC9
B
379 381Right-handed 310
Helix 28
AD1
B
382 390Right-handed alpha
Helix 29
AD2
B
418 433Right-handed alpha
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There are 4 sheets in PDB entry 9GIZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 45first strand
Strand 2
A
115 120anti-parallel
Strand 3
A
73 77parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 172first strand
Strand 2
A
215 220anti-parallel
Strand 3
A
187 190anti-parallel
Strand 4
A
395 403anti-parallel
Strand 5
A
406 413anti-parallel
Strand 6
A
346 349anti-parallel
Strand 7
A
247 250parallel
Strand 8
A
280 282parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 45first strand
Strand 2
B
115 120anti-parallel
Strand 3
B
73 77parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
167 171first strand
Strand 2
B
216 220anti-parallel
Strand 3
B
187 190anti-parallel
Strand 4
B
395 403anti-parallel
Strand 5
B
406 413anti-parallel
Strand 6
B
346 349anti-parallel
Strand 7
B
247 250parallel
Strand 8
B
280 282parallel
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