Analysis of interatomic Contacts of Structural Units in PDB entry:
9GJ2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GJ2 entry

There are 2 chains in PDB entry 9GJ2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 0ALA 219
B
 LEU 1ALA 220
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 9GJ2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 11Right-handed 310
Helix 2
AA2
A
24 43Right-handed alpha
Helix 3
AA3
A
49 57Right-handed alpha
Helix 4
AA4
A
58 62Right-handed 310
Helix 5
AA5
A
64 68Right-handed 310
Helix 6
AA6
A
70 82Right-handed alpha
Helix 7
AA7
A
102 104Right-handed 310
Helix 8
AA8
A
120 131Right-handed alpha
Helix 9
AA9
A
142 148Right-handed alpha
Helix 10
AB1
A
204 208Right-handed 310
Helix 11
AB2
B
8 11Right-handed 310
Helix 12
AB3
B
24 43Right-handed alpha
Helix 13
AB4
B
49 57Right-handed alpha
Helix 14
AB5
B
58 62Right-handed 310
Helix 15
AB6
B
64 68Right-handed 310
Helix 16
AB7
B
70 82Right-handed alpha
Helix 17
AB8
B
102 104Right-handed 310
Helix 18
AB9
B
120 131Right-handed alpha
Helix 19
AC1
B
142 147Right-handed alpha
Helix 20
AC2
B
204 208Right-handed 310
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There are 8 sheets in PDB entry 9GJ2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
164 174anti-parallel
Strand 3
A
134 138anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
164 174anti-parallel
Strand 3
A
177 183anti-parallel
Strand 4
A
195 199anti-parallel
Strand 5
A
152 153parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 85first strand
Strand 2
A
106 108anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 115first strand
Strand 2
A
213 216anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 6first strand
Strand 2
B
164 174anti-parallel
Strand 3
B
134 138anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 6first strand
Strand 2
B
164 174anti-parallel
Strand 3
B
177 183anti-parallel
Strand 4
B
195 199anti-parallel
Strand 5
B
152 153parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 85first strand
Strand 2
B
106 108anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 115first strand
Strand 2
B
213 216anti-parallel
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