Analysis of interatomic Contacts of Structural Units in PDB entry:
9GJ9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GJ9 entry

There are 7 chains in PDB entry 9GJ9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	THR 208
A	TYR 210	SER 389
B	ASN 2	THR 208
B	TYR 210	SER 389
C	ASN 2	THR 208
C	TYR 210	SER 389
D	MET 1	THR 208

There are107 helices in PDB entry 9GJ9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	13	Right-handed alpha
Helix 2	AA2	A	17	22	Right-handed alpha
Helix 3	AA3	A	38	51	Right-handed alpha
Helix 4	AA4	A	68	83	Right-handed alpha
Helix 5	AA5	A	92	107	Right-handed alpha
Helix 6	AA6	A	119	129	Right-handed alpha
Helix 7	AA7	A	139	141	Right-handed 310
Helix 8	AA8	A	142	147	Right-handed alpha
Helix 9	AA9	A	168	177	Right-handed alpha
Helix 10	AB1	A	188	193	Right-handed alpha
Helix 11	AB2	A	194	199	Right-handed alpha
Helix 12	AB3	A	225	240	Right-handed alpha
Helix 13	AB4	A	244	257	Right-handed alpha
Helix 14	AB5	A	257	278	Right-handed alpha
Helix 15	AB6	A	297	302	Right-handed alpha
Helix 16	AB7	A	317	327	Right-handed alpha
Helix 17	AB8	A	346	351	Right-handed 310
Helix 18	AB9	A	374	388	Right-handed alpha
Helix 19	AC1	B	5	13	Right-handed alpha
Helix 20	AC2	B	17	22	Right-handed alpha
Helix 21	AC3	B	38	51	Right-handed alpha
Helix 22	AC4	B	68	83	Right-handed alpha
Helix 23	AC5	B	92	107	Right-handed alpha
Helix 24	AC6	B	119	129	Right-handed alpha
Helix 25	AC7	B	139	141	Right-handed 310
Helix 26	AC8	B	142	147	Right-handed alpha
Helix 27	AC9	B	168	177	Right-handed alpha
Helix 28	AD1	B	188	193	Right-handed alpha
Helix 29	AD2	B	194	199	Right-handed alpha
Helix 30	AD3	B	225	240	Right-handed alpha
Helix 31	AD4	B	244	257	Right-handed alpha
Helix 32	AD5	B	257	278	Right-handed alpha
Helix 33	AD6	B	297	302	Right-handed alpha
Helix 34	AD7	B	317	327	Right-handed alpha
Helix 35	AD8	B	346	351	Right-handed 310
Helix 36	AD9	B	374	388	Right-handed alpha
Helix 37	AE1	C	5	13	Right-handed alpha
Helix 38	AE2	C	17	22	Right-handed alpha
Helix 39	AE3	C	38	51	Right-handed alpha
Helix 40	AE4	C	68	83	Right-handed alpha
Helix 41	AE5	C	92	107	Right-handed alpha
Helix 42	AE6	C	119	129	Right-handed alpha
Helix 43	AE7	C	139	141	Right-handed 310
Helix 44	AE8	C	142	147	Right-handed alpha
Helix 45	AE9	C	168	177	Right-handed alpha
Helix 46	AF1	C	188	193	Right-handed alpha
Helix 47	AF2	C	194	199	Right-handed alpha
Helix 48	AF3	C	225	240	Right-handed alpha
Helix 49	AF4	C	244	257	Right-handed alpha
Helix 50	AF5	C	257	278	Right-handed alpha
Helix 51	AF6	C	297	302	Right-handed alpha
Helix 52	AF7	C	317	327	Right-handed alpha
Helix 53	AF8	C	346	351	Right-handed 310
Helix 54	AF9	C	374	388	Right-handed alpha
Helix 55	AG1	D	5	13	Right-handed alpha
Helix 56	AG2	D	17	22	Right-handed alpha
Helix 57	AG3	D	38	51	Right-handed alpha
Helix 58	AG4	D	68	83	Right-handed alpha
Helix 59	AG5	D	92	107	Right-handed alpha
Helix 60	AG6	D	119	129	Right-handed alpha
Helix 61	AG7	D	139	141	Right-handed 310
Helix 62	AG8	D	142	147	Right-handed alpha
Helix 63	AG9	D	168	177	Right-handed alpha
Helix 64	AH1	D	188	193	Right-handed alpha
Helix 65	AH2	D	194	199	Right-handed alpha
Helix 66	AH3	D	225	240	Right-handed alpha
Helix 67	AH4	D	244	257	Right-handed alpha
Helix 68	AH5	D	257	278	Right-handed alpha
Helix 69	AH6	D	297	302	Right-handed alpha
Helix 70	AH7	D	317	327	Right-handed alpha
Helix 71	AH8	D	346	351	Right-handed 310
Helix 72	AH9	D	374	388	Right-handed alpha
Helix 73	AI1	E	5	13	Right-handed alpha
Helix 74	AI2	E	17	22	Right-handed alpha
Helix 75	AI3	E	38	51	Right-handed alpha
Helix 76	AI4	E	68	83	Right-handed alpha
Helix 77	AI5	E	92	107	Right-handed alpha
Helix 78	AI6	E	119	129	Right-handed alpha
Helix 79	AI7	E	139	141	Right-handed 310
Helix 80	AI8	E	142	147	Right-handed alpha
Helix 81	AI9	E	168	177	Right-handed alpha
Helix 82	AJ1	E	188	193	Right-handed alpha
Helix 83	AJ2	E	194	199	Right-handed alpha
Helix 84	AJ3	E	225	240	Right-handed alpha
Helix 85	AJ4	E	244	257	Right-handed alpha
Helix 86	AJ5	E	257	278	Right-handed alpha
Helix 87	AJ6	E	297	302	Right-handed alpha
Helix 88	AJ7	E	317	327	Right-handed alpha
Helix 89	AJ8	E	346	351	Right-handed 310
Helix 90	AJ9	E	374	388	Right-handed alpha
Helix 91	AK1	F	5	13	Right-handed alpha
Helix 92	AK2	F	17	22	Right-handed alpha
Helix 93	AK3	F	38	51	Right-handed alpha
Helix 94	AK4	F	68	83	Right-handed alpha
Helix 95	AK5	F	92	107	Right-handed alpha
Helix 96	AK6	F	119	129	Right-handed alpha
Helix 97	AK7	F	139	141	Right-handed 310
Helix 98	AK8	F	142	147	Right-handed alpha
Helix 99	AK9	F	168	177	Right-handed alpha
Helix 100	AL1	F	188	193	Right-handed alpha
Helix 101	AL2	F	194	199	Right-handed alpha
Helix 102	AL3	F	225	240	Right-handed alpha
Helix 103	AL4	F	244	257	Right-handed alpha
Helix 104	AL5	F	257	278	Right-handed alpha
Helix 105	AL6	F	317	327	Right-handed alpha
Helix 106	AL7	F	346	351	Right-handed 310
Helix 107	AL8	F	374	388	Right-handed alpha

There are 12 sheets in PDB entry 9GJ9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	90	first strand
Strand 2	A	220	224	anti-parallel
Strand 3	A	202	205	anti-parallel
Strand 4	A	181	184	parallel
Strand 5	A	151	157	parallel
Strand 6	A	111	115	parallel
Strand 7	A	134	138	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	286	first strand
Strand 2	A	309	314	anti-parallel
Strand 3	A	365	369	anti-parallel
Strand 4	A	343	345	anti-parallel
Strand 5	A	332	333	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	90	first strand
Strand 2	B	220	224	anti-parallel
Strand 3	B	202	205	anti-parallel
Strand 4	B	181	184	parallel
Strand 5	B	151	156	parallel
Strand 6	B	111	115	parallel
Strand 7	B	134	138	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	286	first strand
Strand 2	B	309	314	anti-parallel
Strand 3	B	365	369	anti-parallel
Strand 4	B	343	345	anti-parallel
Strand 5	B	332	333	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	90	first strand
Strand 2	C	220	224	anti-parallel
Strand 3	C	202	205	anti-parallel
Strand 4	C	181	184	parallel
Strand 5	C	151	157	parallel
Strand 6	C	111	112	parallel
Strand 7	C	134	135	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	282	286	first strand
Strand 2	C	309	314	anti-parallel
Strand 3	C	365	369	anti-parallel
Strand 4	C	343	345	anti-parallel
Strand 5	C	332	333	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	86	90	first strand
Strand 2	D	220	224	anti-parallel
Strand 3	D	202	205	anti-parallel
Strand 4	D	181	184	parallel
Strand 5	D	151	157	parallel
Strand 6	D	111	114	parallel
Strand 7	D	134	137	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	282	286	first strand
Strand 2	D	309	314	anti-parallel
Strand 3	D	365	369	anti-parallel
Strand 4	D	343	345	anti-parallel
Strand 5	D	332	333	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	86	90	first strand
Strand 2	E	220	224	anti-parallel
Strand 3	E	202	205	anti-parallel
Strand 4	E	181	184	parallel
Strand 5	E	151	157	parallel
Strand 6	E	111	112	parallel
Strand 7	E	134	135	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	282	286	first strand
Strand 2	E	309	314	anti-parallel
Strand 3	E	365	369	anti-parallel
Strand 4	E	343	345	anti-parallel
Strand 5	E	332	333	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	86	90	first strand
Strand 2	F	220	224	anti-parallel
Strand 3	F	202	205	anti-parallel
Strand 4	F	181	184	parallel
Strand 5	F	151	157	parallel
Strand 6	F	111	114	parallel
Strand 7	F	134	137	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	282	286	first strand
Strand 2	F	309	314	anti-parallel
Strand 3	F	365	369	anti-parallel
Strand 4	F	343	345	anti-parallel
Strand 5	F	332	333	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GJ9

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GJ9