Analysis of interatomic Contacts of Structural Units in PDB entry:
9GJA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GJA entry

There are 2 chains in PDB entry 9GJA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	ASP 16	VAL 670
L	LYS 14	ALA 288

There are 20 helices in PDB entry 9GJA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	30	34	Right-handed alpha
Helix 2	AA2	H	90	94	Right-handed 310
Helix 3	AA3	H	125	129	Right-handed 310
Helix 4	AA4	H	188	196	Right-handed alpha
Helix 5	AA5	H	224	235	Right-handed alpha
Helix 6	AA6	H	236	241	Right-handed 310
Helix 7	AA7	H	263	267	Right-handed 310
Helix 8	AA8	H	268	273	Right-handed alpha
Helix 9	AA9	H	282	298	Right-handed alpha
Helix 10	AB1	H	328	333	Right-handed alpha
Helix 11	AB2	H	334	336	Right-handed 310
Helix 12	AB3	H	350	358	Right-handed alpha
Helix 13	AB4	H	375	391	Right-handed alpha
Helix 14	AB5	H	560	564	Right-handed 310
Helix 15	AB6	H	604	608	Right-handed 310
Helix 16	AB7	L	92	99	Right-handed alpha
Helix 17	AB8	L	135	138	Right-handed 310
Helix 18	AB9	L	182	187	Right-handed alpha
Helix 19	AC1	L	197	201	Right-handed 310
Helix 20	AC2	L	222	226	Right-handed 310

There are 19 sheets in PDB entry 9GJA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	106	108	first strand
Strand 2	H	75	81	anti-parallel
Strand 3	H	63	72	anti-parallel
Strand 4	H	50	55	anti-parallel
Strand 5	H	36	45	anti-parallel
Strand 6	H	20	29	anti-parallel
Strand 7	H	178	181	anti-parallel
Strand 8	H	168	173	anti-parallel
Strand 9	H	148	153	anti-parallel
Strand 10	H	137	143	anti-parallel
Strand 11	H	131	134	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	256	262	first strand
Strand 2	H	247	253	anti-parallel
Strand 3	H	214	220	parallel
Strand 4	H	312	319	parallel
Strand 5	H	338	345	parallel
Strand 6	H	367	370	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	403	404	first strand
Strand 2	H	410	411	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	423	425	first strand
Strand 2	H	432	434	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	452	455	first strand
Strand 2	H	463	467	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	478	481	first strand
Strand 2	H	493	496	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	513	514	first strand
Strand 2	H	523	524	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	569	573	first strand
Strand 2	H	580	584	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	589	591	first strand
Strand 2	H	621	623	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	628	631	first strand
Strand 2	H	638	641	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	650	651	first strand
Strand 2	H	654	659	anti-parallel
Strand 3	H	664	669	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	41	42	first strand
Strand 2	L	260	261	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	77	81	first strand
Strand 2	L	283	287	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	83	84	first strand
Strand 2	L	89	90	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	103	107	first strand
Strand 2	L	126	130	anti-parallel
Strand 3	L	267	273	anti-parallel
Strand 4	L	240	244	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	140	143	first strand
Strand 2	L	147	150	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	157	160	first strand
Strand 2	L	170	173	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	191	192	first strand
Strand 2	L	230	231	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	207	212	first strand
Strand 2	L	215	220	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GJA

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GJA