Analysis of interatomic Contacts of Structural Units in PDB entry:
9GJF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GJF entry

There are 2 chains in PDB entry 9GJF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	ASP 16	LYS 819
L	LYS 14	ALA 288

There are 28 helices in PDB entry 9GJF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	30	34	Right-handed alpha
Helix 2	AA2	H	90	94	Right-handed 310
Helix 3	AA3	H	118	122	Right-handed 310
Helix 4	AA4	H	125	129	Right-handed 310
Helix 5	AA5	H	188	196	Right-handed alpha
Helix 6	AA6	H	227	235	Right-handed alpha
Helix 7	AA7	H	236	241	Right-handed 310
Helix 8	AA8	H	263	267	Right-handed 310
Helix 9	AA9	H	268	273	Right-handed alpha
Helix 10	AB1	H	282	299	Right-handed alpha
Helix 11	AB2	H	328	333	Right-handed alpha
Helix 12	AB3	H	350	358	Right-handed alpha
Helix 13	AB4	H	359	361	Right-handed 310
Helix 14	AB5	H	363	365	Right-handed 310
Helix 15	AB6	H	372	374	Right-handed 310
Helix 16	AB7	H	375	391	Right-handed alpha
Helix 17	AB8	H	560	564	Right-handed 310
Helix 18	AB9	H	586	590	Right-handed 310
Helix 19	AC1	H	604	608	Right-handed 310
Helix 20	AC2	H	684	690	Right-handed alpha
Helix 21	AC3	H	767	773	Right-handed alpha
Helix 22	AC4	L	92	99	Right-handed alpha
Helix 23	AC5	L	111	115	Right-handed 310
Helix 24	AC6	L	135	139	Right-handed 310
Helix 25	AC7	L	182	187	Right-handed alpha
Helix 26	AC8	L	197	201	Right-handed 310
Helix 27	AC9	L	222	226	Right-handed 310
Helix 28	AD1	L	278	281	Right-handed 310

There are 26 sheets in PDB entry 9GJF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	104	108	first strand
Strand 2	H	75	84	anti-parallel
Strand 3	H	63	72	anti-parallel
Strand 4	H	50	55	anti-parallel
Strand 5	H	36	45	anti-parallel
Strand 6	H	20	29	anti-parallel
Strand 7	H	177	181	anti-parallel
Strand 8	H	168	173	anti-parallel
Strand 9	H	148	153	anti-parallel
Strand 10	H	137	143	anti-parallel
Strand 11	H	131	134	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	104	108	first strand
Strand 2	H	75	84	anti-parallel
Strand 3	H	63	72	anti-parallel
Strand 4	H	50	55	anti-parallel
Strand 5	H	36	45	anti-parallel
Strand 6	H	415	416	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	257	262	first strand
Strand 2	H	244	252	anti-parallel
Strand 3	H	214	220	parallel
Strand 4	H	312	319	parallel
Strand 5	H	338	345	parallel
Strand 6	H	367	370	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	403	404	first strand
Strand 2	H	410	411	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	423	425	first strand
Strand 2	H	432	434	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	452	456	first strand
Strand 2	H	462	467	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	478	481	first strand
Strand 2	H	493	496	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	511	515	first strand
Strand 2	H	522	527	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	540	544	first strand
Strand 2	H	550	554	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	569	573	first strand
Strand 2	H	580	584	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	601	602	first strand
Strand 2	H	612	613	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	628	630	first strand
Strand 2	H	639	641	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	650	651	first strand
Strand 2	H	654	659	anti-parallel
Strand 3	H	664	669	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	693	698	first strand
Strand 2	H	701	706	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	717	720	first strand
Strand 2	H	726	729	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	744	749	first strand
Strand 2	H	753	758	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	787	791	first strand
Strand 2	H	798	802	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	809	812	first strand
Strand 2	H	815	818	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	41	42	first strand
Strand 2	L	260	261	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	77	81	first strand
Strand 2	L	283	287	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	83	84	first strand
Strand 2	L	89	90	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	103	105	first strand
Strand 2	L	128	130	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	124	125	first strand
Strand 2	L	168	174	anti-parallel
Strand 3	L	156	160	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	124	125	first strand
Strand 2	L	168	174	anti-parallel
Strand 3	L	269	273	anti-parallel
Strand 4	L	240	244	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	191	192	first strand
Strand 2	L	230	231	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	207	212	first strand
Strand 2	L	215	220	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GJF

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GJF