Analysis of interatomic Contacts of Structural Units in PDB entry:
9GJG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GJG entry

There are 3 chains in PDB entry 9GJG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	ASP 16	ILE 961
L	LYS 14	ALA 288
A	GLU 4	ILE 248

There are 34 helices in PDB entry 9GJG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	29	34	Right-handed alpha
Helix 2	AA2	H	90	94	Right-handed 310
Helix 3	AA3	H	118	122	Right-handed 310
Helix 4	AA4	H	125	129	Right-handed 310
Helix 5	AA5	H	188	196	Right-handed alpha
Helix 6	AA6	H	227	235	Right-handed alpha
Helix 7	AA7	H	236	241	Right-handed 310
Helix 8	AA8	H	268	274	Right-handed alpha
Helix 9	AA9	H	282	299	Right-handed alpha
Helix 10	AB1	H	328	333	Right-handed alpha
Helix 11	AB2	H	350	358	Right-handed alpha
Helix 12	AB3	H	363	365	Right-handed 310
Helix 13	AB4	H	375	390	Right-handed alpha
Helix 14	AB5	H	560	564	Right-handed 310
Helix 15	AB6	H	586	590	Right-handed 310
Helix 16	AB7	H	604	608	Right-handed 310
Helix 17	AB8	H	671	675	Right-handed 310
Helix 18	AB9	H	684	688	Right-handed 310
Helix 19	AC1	H	689	691	Right-handed 310
Helix 20	AC2	H	767	776	Right-handed alpha
Helix 21	AC3	H	865	872	Right-handed alpha
Helix 22	AC4	H	873	876	Right-handed 310
Helix 23	AC5	H	890	896	Right-handed alpha
Helix 24	AC6	H	901	912	Right-handed alpha
Helix 25	AC7	H	940	949	Right-handed alpha
Helix 26	AC8	L	92	99	Right-handed alpha
Helix 27	AC9	L	111	115	Right-handed 310
Helix 28	AD1	L	135	138	Right-handed 310
Helix 29	AD2	L	182	187	Right-handed alpha
Helix 30	AD3	L	197	201	Right-handed 310
Helix 31	AD4	L	222	226	Right-handed 310
Helix 32	AD5	L	278	281	Right-handed 310
Helix 33	AD6	A	90	94	Right-handed 310
Helix 34	AD7	A	221	225	Right-handed 310

There are 33 sheets in PDB entry 9GJG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	104	108	first strand
Strand 2	H	75	84	anti-parallel
Strand 3	H	63	72	anti-parallel
Strand 4	H	50	55	anti-parallel
Strand 5	H	38	45	anti-parallel
Strand 6	H	21	28	anti-parallel
Strand 7	H	178	181	anti-parallel
Strand 8	H	168	173	anti-parallel
Strand 9	H	148	153	anti-parallel
Strand 10	H	137	143	anti-parallel
Strand 11	H	131	134	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	214	215	first strand
Strand 2	H	312	319	parallel
Strand 3	H	218	220	parallel
Strand 4	H	247	252	parallel
Strand 5	H	257	262	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	214	215	first strand
Strand 2	H	312	319	parallel
Strand 3	H	338	345	parallel
Strand 4	H	367	370	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	403	404	first strand
Strand 2	H	410	411	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	423	425	first strand
Strand 2	H	432	434	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	452	457	first strand
Strand 2	H	461	467	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	478	481	first strand
Strand 2	H	493	496	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	512	515	first strand
Strand 2	H	522	526	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	540	544	first strand
Strand 2	H	550	554	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	569	573	first strand
Strand 2	H	580	584	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	601	602	first strand
Strand 2	H	612	613	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	628	631	first strand
Strand 2	H	638	641	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	650	651	first strand
Strand 2	H	654	658	anti-parallel
Strand 3	H	665	669	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	693	698	first strand
Strand 2	H	701	706	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	717	720	first strand
Strand 2	H	726	729	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	745	749	first strand
Strand 2	H	753	757	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	787	791	first strand
Strand 2	H	798	802	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	809	811	first strand
Strand 2	H	816	818	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	824	830	first strand
Strand 2	H	836	846	anti-parallel
Strand 3	H	849	852	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	879	883	first strand
Strand 2	H	914	918	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	924	928	first strand
Strand 2	H	935	939	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	953	955	first strand
Strand 2	H	958	960	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	41	42	first strand
Strand 2	L	260	261	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	77	81	first strand
Strand 2	L	283	287	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	83	84	first strand
Strand 2	L	89	90	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	103	107	first strand
Strand 2	L	124	130	anti-parallel
Strand 3	L	170	174	anti-parallel
Strand 4	L	156	160	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	140	143	first strand
Strand 2	L	147	150	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	191	192	first strand
Strand 2	L	230	232	anti-parallel
Strand 3	L	240	244	anti-parallel
Strand 4	L	269	273	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	207	212	first strand
Strand 2	L	215	220	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	10	first strand
Strand 2	A	21	28	anti-parallel
Strand 3	A	81	86	anti-parallel
Strand 4	A	71	76	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	15	first strand
Strand 2	A	118	122	parallel
Strand 3	A	95	102	anti-parallel
Strand 4	A	36	42	anti-parallel
Strand 5	A	48	54	anti-parallel
Strand 6	A	61	63	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	149	first strand
Strand 2	A	161	167	anti-parallel
Strand 3	A	212	217	anti-parallel
Strand 4	A	204	209	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	154	first strand
Strand 2	A	244	247	parallel
Strand 3	A	227	232	anti-parallel
Strand 4	A	175	180	anti-parallel
Strand 5	A	187	191	anti-parallel
Strand 6	A	195	196	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GJG

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GJG