Analysis of interatomic Contacts of Structural Units in PDB entry:
9GJT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GJT entry

There are 5 chains in PDB entry 9GJT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 LYS 476GLY 580
D
 ILE 478GLY 580
E
 ILE 478LYS 581
A
 LEU 5VAL 1451
B
 ASP 475ILE 709
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 79 helices in PDB entry 9GJT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
479 485Right-handed alpha
Helix 2
AA2
C
489 504Right-handed alpha
Helix 3
AA3
C
507 540Right-handed alpha
Helix 4
AA4
C
542 574Right-handed alpha
Helix 5
AA5
D
479 484Right-handed alpha
Helix 6
AA6
D
485 487Right-handed 310
Helix 7
AA7
D
492 503Right-handed alpha
Helix 8
AA8
D
504 506Right-handed 310
Helix 9
AA9
D
507 541Right-handed alpha
Helix 10
AB1
D
542 578Right-handed alpha
Helix 11
AB2
E
479 484Right-handed 310
Helix 12
AB3
E
489 504Right-handed alpha
Helix 13
AB4
E
507 540Right-handed alpha
Helix 14
AB5
E
542 573Right-handed alpha
Helix 15
AB6
A
6 11Right-handed alpha
Helix 16
AB7
A
22 34Right-handed alpha
Helix 17
AB8
A
43 57Right-handed alpha
Helix 18
AB9
A
60 77Right-handed alpha
Helix 19
AC1
A
87 96Right-handed alpha
Helix 20
AC2
A
104 137Right-handed alpha
Helix 21
AC3
A
140 156Right-handed alpha
Helix 22
AC4
A
156 163Right-handed alpha
Helix 23
AC5
A
166 189Right-handed alpha
Helix 24
AC6
A
190 193Right-handed 310
Helix 25
AC7
A
231 255Right-handed alpha
Helix 26
AC8
A
256 259Right-handed 310
Helix 27
AC9
A
260 273Right-handed alpha
Helix 28
AD1
A
274 280Right-handed alpha
Helix 29
AD2
A
282 289Right-handed alpha
Helix 30
AD3
A
289 300Right-handed alpha
Helix 31
AD4
A
309 326Right-handed alpha
Helix 32
AD5
A
330 346Right-handed alpha
Helix 33
AD6
A
349 355Right-handed alpha
Helix 34
AD7
A
356 360Right-handed 310
Helix 35
AD8
A
369 382Right-handed alpha
Helix 36
AD9
A
389 411Right-handed alpha
Helix 37
AE1
A
425 434Right-handed alpha
Helix 38
AE2
A
439 446Right-handed alpha
Helix 39
AE3
A
447 451Right-handed 310
Helix 40
AE4
A
479 487Right-handed 310
Helix 41
AE5
A
488 492Right-handed 310
Helix 42
AE6
A
504 512Right-handed alpha
Helix 43
AE7
A
516 526Right-handed alpha
Helix 44
AE8
A
557 574Right-handed alpha
Helix 45
AE9
A
575 579Right-handed 310
Helix 46
AF1
A
726 730Right-handed 310
Helix 47
AF2
A
731 747Right-handed alpha
Helix 48
AF3
A
753 760Right-handed alpha
Helix 49
AF4
A
802 822Right-handed alpha
Helix 50
AF5
A
847 874Right-handed alpha
Helix 51
AF6
A
904 910Right-handed alpha
Helix 52
AF7
A
922 940Right-handed alpha
Helix 53
AF8
A
943 965Right-handed alpha
Helix 54
AF9
A
972 981Right-handed alpha
Helix 55
AG1
A
982 992Right-handed alpha
Helix 56
AG2
A
993 997Right-handed 310
Helix 57
AG3
A
1014 1029Right-handed alpha
Helix 58
AG4
A
1033 1041Right-handed alpha
Helix 59
AG5
A
1049 1056Right-handed alpha
Helix 60
AG6
A
1067 1081Right-handed alpha
Helix 61
AG7
A
1096 1108Right-handed alpha
Helix 62
AG8
A
1115 1125Right-handed alpha
Helix 63
AG9
A
1156 1178Right-handed alpha
Helix 64
AH1
A
1191 1204Right-handed alpha
Helix 65
AH2
A
1204 1209Right-handed alpha
Helix 66
AH3
A
1238 1242Right-handed 310
Helix 67
AH4
A
1291 1307Right-handed alpha
Helix 68
AH5
A
1310 1322Right-handed alpha
Helix 69
AH6
A
1328 1336Right-handed alpha
Helix 70
AH7
A
1366 1370Right-handed 310
Helix 71
AH8
A
1391 1407Right-handed alpha
Helix 72
AH9
B
479 486Right-handed alpha
Helix 73
AI1
B
489 502Right-handed alpha
Helix 74
AI2
B
507 527Right-handed alpha
Helix 75
AI3
B
528 541Right-handed alpha
Helix 76
AI4
B
542 572Right-handed alpha
Helix 77
AI5
B
657 672Right-handed alpha
Helix 78
AI6
B
674 688Right-handed alpha
Helix 79
AI7
B
690 707Right-handed alpha
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There are 10 sheets in PDB entry 9GJT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 388first strand
Strand 2
E
575 578anti-parallel
Strand 3
B
597 599parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 85first strand
Strand 2
A
224 230parallel
Strand 3
A
215 221anti-parallel
Strand 4
A
206 210anti-parallel
Strand 5
A
199 202anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
418 419first strand
Strand 2
A
454 455anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
537 541first strand
Strand 2
A
552 556anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
824 830first strand
Strand 2
A
833 842anti-parallel
Strand 3
A
713 721anti-parallel
Strand 4
A
883 885anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
763 765first strand
Strand 2
A
790 792anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
888 891first strand
Strand 2
A
894 897anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1113 1114first strand
Strand 2
A
1212 1213parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1225 1230first strand
Strand 2
A
1418 1424anti-parallel
Strand 3
A
1246 1251anti-parallel
Strand 4
A
1371 1373anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1380 1381first strand
Strand 2
A
1384 1385anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il