Analysis of interatomic Contacts of Structural Units in PDB entry:
9GJY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GJY entry

There are 6 chains in PDB entry 9GJY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 227
B
 ARG -4GLU 227
C
 ARG -4GLU 227
D
 ARG -4GLU 227
E
 THR 2GLU 227
F
 GLY -3GLU 227
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 82 helices in PDB entry 9GJY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 17Right-handed alpha
Helix 2
AA2
A
30 43Right-handed alpha
Helix 3
AA3
A
46 50Right-handed 310
Helix 4
AA4
A
60 69Right-handed alpha
Helix 5
AA5
A
70 75Right-handed 310
Helix 6
AA6
A
76 81Right-handed alpha
Helix 7
AA7
A
92 95Right-handed 310
Helix 8
AA8
A
99 109Right-handed alpha
Helix 9
AA9
A
113 122Right-handed alpha
Helix 10
AB1
A
125 132Right-handed alpha
Helix 11
AB2
A
140 166Right-handed alpha
Helix 12
AB3
A
177 188Right-handed alpha
Helix 13
AB4
A
218 222Right-handed alpha
Helix 14
AB5
B
-3 17Right-handed alpha
Helix 15
AB6
B
30 43Right-handed alpha
Helix 16
AB7
B
46 50Right-handed 310
Helix 17
AB8
B
60 70Right-handed alpha
Helix 18
AB9
B
71 75Right-handed 310
Helix 19
AC1
B
76 81Right-handed alpha
Helix 20
AC2
B
92 95Right-handed 310
Helix 21
AC3
B
99 109Right-handed alpha
Helix 22
AC4
B
113 122Right-handed alpha
Helix 23
AC5
B
125 132Right-handed alpha
Helix 24
AC6
B
136 139Right-handed 310
Helix 25
AC7
B
140 166Right-handed alpha
Helix 26
AC8
B
177 188Right-handed alpha
Helix 27
AC9
B
218 222Right-handed alpha
Helix 28
AD1
C
-3 17Right-handed alpha
Helix 29
AD2
C
30 43Right-handed alpha
Helix 30
AD3
C
46 50Right-handed 310
Helix 31
AD4
C
60 69Right-handed alpha
Helix 32
AD5
C
70 75Right-handed 310
Helix 33
AD6
C
76 81Right-handed alpha
Helix 34
AD7
C
92 95Right-handed 310
Helix 35
AD8
C
99 109Right-handed alpha
Helix 36
AD9
C
113 122Right-handed alpha
Helix 37
AE1
C
125 132Right-handed alpha
Helix 38
AE2
C
136 139Right-handed 310
Helix 39
AE3
C
140 166Right-handed alpha
Helix 40
AE4
C
177 188Right-handed alpha
Helix 41
AE5
C
218 222Right-handed alpha
Helix 42
AE6
D
-3 17Right-handed alpha
Helix 43
AE7
D
30 43Right-handed alpha
Helix 44
AE8
D
46 50Right-handed 310
Helix 45
AE9
D
60 70Right-handed alpha
Helix 46
AF1
D
71 75Right-handed 310
Helix 47
AF2
D
76 81Right-handed alpha
Helix 48
AF3
D
92 95Right-handed 310
Helix 49
AF4
D
99 109Right-handed alpha
Helix 50
AF5
D
113 122Right-handed alpha
Helix 51
AF6
D
125 132Right-handed alpha
Helix 52
AF7
D
136 139Right-handed 310
Helix 53
AF8
D
140 166Right-handed alpha
Helix 54
AF9
D
177 188Right-handed alpha
Helix 55
AG1
D
218 222Right-handed alpha
Helix 56
AG2
E
3 17Right-handed alpha
Helix 57
AG3
E
30 43Right-handed alpha
Helix 58
AG4
E
46 50Right-handed 310
Helix 59
AG5
E
60 70Right-handed alpha
Helix 60
AG6
E
71 75Right-handed 310
Helix 61
AG7
E
76 81Right-handed alpha
Helix 62
AG8
E
92 95Right-handed 310
Helix 63
AG9
E
99 109Right-handed alpha
Helix 64
AH1
E
113 122Right-handed alpha
Helix 65
AH2
E
125 132Right-handed alpha
Helix 66
AH3
E
136 139Right-handed 310
Helix 67
AH4
E
140 166Right-handed alpha
Helix 68
AH5
E
177 188Right-handed alpha
Helix 69
AH6
E
218 222Right-handed alpha
Helix 70
AH7
F
-2 17Right-handed alpha
Helix 71
AH8
F
30 43Right-handed alpha
Helix 72
AH9
F
46 50Right-handed 310
Helix 73
AI1
F
60 69Right-handed alpha
Helix 74
AI2
F
70 75Right-handed 310
Helix 75
AI3
F
76 81Right-handed alpha
Helix 76
AI4
F
92 95Right-handed 310
Helix 77
AI5
F
99 109Right-handed alpha
Helix 78
AI6
F
113 122Right-handed alpha
Helix 79
AI7
F
125 132Right-handed alpha
Helix 80
AI8
F
140 166Right-handed alpha
Helix 81
AI9
F
177 188Right-handed alpha
Helix 82
AJ1
F
218 222Right-handed alpha
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There are 6 sheets in PDB entry 9GJY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 173first strand
Strand 2
A
196 205anti-parallel
Strand 3
A
83 90anti-parallel
Strand 4
A
53 58anti-parallel
Strand 5
B
223 226parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 226first strand
Strand 2
B
53 58parallel
Strand 3
B
83 90anti-parallel
Strand 4
B
196 205anti-parallel
Strand 5
B
169 173anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
169 173first strand
Strand 2
C
196 205anti-parallel
Strand 3
C
83 90anti-parallel
Strand 4
C
53 58anti-parallel
Strand 5
D
223 226parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
223 226first strand
Strand 2
D
53 58parallel
Strand 3
D
83 90anti-parallel
Strand 4
D
196 205anti-parallel
Strand 5
D
169 173anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
169 173first strand
Strand 2
E
196 205anti-parallel
Strand 3
E
83 90anti-parallel
Strand 4
E
53 58anti-parallel
Strand 5
F
223 226parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
223 226first strand
Strand 2
F
53 58parallel
Strand 3
F
83 90anti-parallel
Strand 4
F
196 205anti-parallel
Strand 5
F
169 173anti-parallel
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