Analysis of interatomic Contacts of Structural Units in PDB entry:
9GKF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GKF entry

There are 20 chains in PDB entry 9GKF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 53ALA 109
B
 GLY 53ALA 109
C
 GLY 53ALA 109
D
 GLY 53ALA 109
E
 GLY 53ALA 109
F
 GLY 53ALA 109
G
 GLY 53ALA 109
H
 GLY 53ALA 109
I
 GLY 53ALA 109
J
 GLY 53ALA 109
K
 GLY 53ALA 109
L
 GLY 53ALA 109
M
 GLY 53ALA 109
N
 GLY 53ALA 109
O
 GLY 53ALA 109
P
 GLY 53ALA 109
Q
 GLY 53ALA 109
R
 GLY 53ALA 109
S
 GLY 53ALA 109
T
 GLY 53ALA 109
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page
There are no helices in PDB entry 9GKF

There are 9 sheets in PDB entry 9GKF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 75first strand
Strand 2
B
74 75parallel
Strand 3
C
74 75parallel
Strand 4
D
74 75parallel
Back to list of sheets
Back to top of page

There are 20 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 85first strand
Strand 2
B
83 85parallel
Strand 3
C
83 85parallel
Strand 4
D
83 85parallel
Strand 5
E
83 85parallel
Strand 6
F
83 85parallel
Strand 7
G
83 85parallel
Strand 8
H
83 85parallel
Strand 9
I
83 85parallel
Strand 10
J
83 85parallel
Strand 11
K
83 85parallel
Strand 12
L
83 85parallel
Strand 13
M
83 85parallel
Strand 14
N
83 85parallel
Strand 15
O
83 85parallel
Strand 16
P
83 85parallel
Strand 17
Q
83 85parallel
Strand 18
R
83 85parallel
Strand 19
S
83 85parallel
Strand 20
T
83 85parallel
Back to list of sheets
Back to top of page

There are 20 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 98first strand
Strand 2
B
96 98parallel
Strand 3
C
96 98parallel
Strand 4
D
96 98parallel
Strand 5
E
96 98parallel
Strand 6
F
96 98parallel
Strand 7
G
96 98parallel
Strand 8
H
96 98parallel
Strand 9
I
96 98parallel
Strand 10
J
96 98parallel
Strand 11
K
96 98parallel
Strand 12
L
96 98parallel
Strand 13
M
96 98parallel
Strand 14
N
96 98parallel
Strand 15
O
96 98parallel
Strand 16
P
96 98parallel
Strand 17
Q
96 98parallel
Strand 18
R
96 98parallel
Strand 19
S
96 98parallel
Strand 20
T
96 98parallel
Back to list of sheets
Back to top of page

There are 20 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 108first strand
Strand 2
B
106 108parallel
Strand 3
C
106 108parallel
Strand 4
D
106 108parallel
Strand 5
E
106 108parallel
Strand 6
F
106 108parallel
Strand 7
G
106 107parallel
Strand 8
H
106 107parallel
Strand 9
I
106 107parallel
Strand 10
J
106 107parallel
Strand 11
K
106 107parallel
Strand 12
L
106 108parallel
Strand 13
M
106 108parallel
Strand 14
N
106 108parallel
Strand 15
O
106 108parallel
Strand 16
P
106 108parallel
Strand 17
Q
106 108parallel
Strand 18
R
106 108parallel
Strand 19
S
106 108parallel
Strand 20
T
106 108parallel
Back to list of sheets
Back to top of page

There are 19 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 89first strand
Strand 2
C
88 89parallel
Strand 3
D
88 89parallel
Strand 4
E
88 89parallel
Strand 5
F
88 89parallel
Strand 6
G
88 89parallel
Strand 7
H
88 89parallel
Strand 8
I
88 89parallel
Strand 9
J
88 89parallel
Strand 10
K
88 89parallel
Strand 11
L
88 89parallel
Strand 12
M
88 89parallel
Strand 13
N
88 89parallel
Strand 14
O
88 89parallel
Strand 15
P
88 89parallel
Strand 16
Q
88 89parallel
Strand 17
R
88 89parallel
Strand 18
S
88 89parallel
Strand 19
T
88 89parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
59 61first strand
Strand 2
J
59 61parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
59 61first strand
Strand 2
P
59 61parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
74 75first strand
Strand 2
P
74 75parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
59 61first strand
Strand 2
S
59 61parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il