Analysis of interatomic Contacts of Structural Units in PDB entry:
9GKM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GKM entry

There are 4 chains in PDB entry 9GKM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1GLY 75
C
 MET 1LEU 73
D
 MET 1GLY 76
A
 SER 484SER 2040
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 9GKM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
23 34Right-handed alpha
Helix 2
AA2
C
23 34Right-handed alpha
Helix 3
AA3
C
56 59Right-handed 310
Helix 4
AA4
D
23 34Right-handed alpha
Helix 5
AA5
A
484 495Right-handed alpha
Helix 6
AA6
A
499 514Right-handed alpha
Helix 7
AA7
A
526 538Right-handed alpha
Helix 8
AA8
A
543 559Right-handed alpha
Helix 9
AA9
A
563 568Right-handed alpha
Helix 10
AB1
A
570 579Right-handed alpha
Helix 11
AB2
A
584 599Right-handed alpha
Helix 12
AB3
A
602 608Right-handed alpha
Helix 13
AB4
A
610 615Right-handed alpha
Helix 14
AB5
A
623 638Right-handed alpha
Helix 15
AB6
A
645 649Right-handed alpha
Helix 16
AB7
A
651 659Right-handed alpha
Helix 17
AB8
A
664 681Right-handed alpha
Helix 18
AB9
A
685 692Right-handed alpha
Helix 19
AC1
A
694 705Right-handed alpha
Helix 20
AC2
A
713 729Right-handed alpha
Helix 21
AC3
A
731 739Right-handed alpha
Helix 22
AC4
A
742 751Right-handed alpha
Helix 23
AC5
A
769 782Right-handed alpha
Helix 24
AC6
A
793 798Right-handed alpha
Helix 25
AC7
A
867 874Right-handed alpha
Helix 26
AC8
A
876 895Right-handed alpha
Helix 27
AC9
A
900 916Right-handed alpha
Helix 28
AD1
A
919 926Right-handed alpha
Helix 29
AD2
A
931 939Right-handed alpha
Helix 30
AD3
A
944 960Right-handed alpha
Helix 31
AD4
A
963 966Right-handed 310
Helix 32
AD5
A
967 972Right-handed alpha
Helix 33
AD6
A
974 983Right-handed alpha
Helix 34
AD7
A
1132 1152Right-handed alpha
Helix 35
AD8
A
1167 1178Right-handed alpha
Helix 36
AD9
A
1187 1198Right-handed alpha
Helix 37
AE1
A
1204 1209Right-handed alpha
Helix 38
AE2
A
1211 1220Right-handed alpha
Helix 39
AE3
A
1230 1241Right-handed alpha
Helix 40
AE4
A
1261 1277Right-handed alpha
Helix 41
AE5
A
1306 1312Right-handed alpha
Helix 42
AE6
A
1343 1351Right-handed alpha
Helix 43
AE7
A
1406 1414Right-handed alpha
Helix 44
AE8
A
1435 1440Right-handed alpha
Helix 45
AE9
A
1484 1488Right-handed alpha
Helix 46
AF1
A
1498 1502Right-handed alpha
Helix 47
AF2
A
1517 1532Right-handed alpha
Helix 48
AF3
A
1555 1564Right-handed alpha
Helix 49
AF4
A
1567 1572Right-handed alpha
Helix 50
AF5
A
1577 1586Right-handed alpha
Helix 51
AF6
A
1592 1603Right-handed alpha
Helix 52
AF7
A
1606 1616Right-handed alpha
Helix 53
AF8
A
1646 1657Right-handed alpha
Helix 54
AF9
A
1676 1691Right-handed alpha
Helix 55
AG1
A
1735 1757Right-handed alpha
Helix 56
AG2
A
1768 1775Right-handed alpha
Helix 57
AG3
A
1783 1789Right-handed 310
Helix 58
AG4
A
1792 1812Right-handed alpha
Helix 59
AG5
A
1818 1827Right-handed alpha
Helix 60
AG6
A
1834 1838Right-handed alpha
Helix 61
AG7
A
1866 1879Right-handed alpha
Helix 62
AG8
A
1883 1893Right-handed alpha
Helix 63
AG9
A
1907 1915Right-handed alpha
Helix 64
AH1
A
1924 1930Right-handed alpha
Helix 65
AH2
A
1942 1953Right-handed alpha
Helix 66
AH3
A
1956 1967Right-handed alpha
Helix 67
AH4
A
1976 1979Right-handed 310
Helix 68
AH5
A
2019 2032Right-handed alpha
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There are 8 sheets in PDB entry 9GKM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 17first strand
Strand 2
B
1 7anti-parallel
Strand 3
B
64 72parallel
Strand 4
B
40 45anti-parallel
Strand 5
B
48 50anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 17first strand
Strand 2
C
1 7anti-parallel
Strand 3
C
64 72parallel
Strand 4
C
40 45anti-parallel
Strand 5
C
48 50anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 17first strand
Strand 2
D
1 7anti-parallel
Strand 3
D
64 72parallel
Strand 4
D
40 45anti-parallel
Strand 5
D
48 50anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1334 1337first strand
Strand 2
A
1314 1320anti-parallel
Strand 3
A
1442 1448parallel
Strand 4
A
1392 1396anti-parallel
Strand 5
A
1399 1400anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1636 1641first strand
Strand 2
A
1663 1668parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1701 1704first strand
Strand 2
A
1716 1719anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1842 1844first strand
Strand 2
A
1849 1852anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1933 1935first strand
Strand 2
A
1985 1988parallel
Strand 3
A
2009 2013parallel
Strand 4
A
2003 2005anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il