Analysis of interatomic Contacts of Structural Units in PDB entry:
9GKQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GKQ entry

There is 1 chain in PDB entry 9GKQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 1294
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 9GKQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 57Right-handed 310
Helix 2
AA2
A
80 101Right-handed alpha
Helix 3
AA3
A
101 114Right-handed alpha
Helix 4
AA4
A
130 132Right-handed 310
Helix 5
AA5
A
216 233Right-handed alpha
Helix 6
AA6
A
259 267Right-handed alpha
Helix 7
AA7
A
270 274Right-handed 310
Helix 8
AA8
A
275 299Right-handed alpha
Helix 9
AA9
A
309 322Right-handed alpha
Helix 10
AB1
A
334 347Right-handed alpha
Helix 11
AB2
A
350 359Right-handed alpha
Helix 12
AB3
A
398 405Right-handed 310
Helix 13
AB4
A
467 471Right-handed 310
Helix 14
AB5
A
495 506Right-handed alpha
Helix 15
AB6
A
549 557Right-handed alpha
Helix 16
AB7
A
571 577Right-handed alpha
Helix 17
AB8
A
587 596Right-handed alpha
Helix 18
AB9
A
602 619Right-handed alpha
Helix 19
AC1
A
634 636Right-handed 310
Helix 20
AC2
A
637 642Right-handed alpha
Helix 21
AC3
A
643 646Right-handed 310
Helix 22
AC4
A
648 660Right-handed alpha
Helix 23
AC5
A
687 753Right-handed alpha
Helix 24
AC6
A
755 762Right-handed alpha
Helix 25
AC7
A
766 800Right-handed alpha
Helix 26
AC8
A
800 826Right-handed alpha
Helix 27
AC9
A
827 829Right-handed 310
Helix 28
AD1
A
833 847Right-handed alpha
Helix 29
AD2
A
852 856Right-handed 310
Helix 30
AD3
A
859 871Right-handed alpha
Helix 31
AD4
A
954 958Right-handed 310
Helix 32
AD5
A
1080 1093Right-handed alpha
Helix 33
AD6
A
1211 1215Right-handed 310
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There are 15 sheets in PDB entry 9GKQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 148first strand
Strand 2
A
134 138anti-parallel
Strand 3
A
19 23anti-parallel
Strand 4
A
33 39anti-parallel
Strand 5
A
42 45anti-parallel
Strand 6
A
151 154parallel
Strand 7
A
184 187parallel
Strand 8
A
164 167anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 214first strand
Strand 2
A
192 196anti-parallel
Strand 3
A
372 376anti-parallel
Strand 4
A
413 416anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 325first strand
Strand 2
A
331 332anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
453 455first strand
Strand 2
A
429 431anti-parallel
Strand 3
A
544 545parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
480 481first strand
Strand 2
A
680 681parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
568 569first strand
Strand 2
A
582 583parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
887 890first strand
Strand 2
A
879 884anti-parallel
Strand 3
A
1067 1075anti-parallel
Strand 4
A
914 916anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
887 890first strand
Strand 2
A
879 884anti-parallel
Strand 3
A
1067 1075anti-parallel
Strand 4
A
940 947anti-parallel
Strand 5
A
1015 1022anti-parallel
Strand 6
A
1026 1031anti-parallel
Strand 7
A
1035 1039anti-parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
897 900first strand
Strand 2
A
924 927anti-parallel
Strand 3
A
1052 1058anti-parallel
Strand 4
A
962 966anti-parallel
Strand 5
A
973 979anti-parallel
Strand 6
A
982 988anti-parallel
Strand 7
A
998 1000anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1114 1115first strand
Strand 2
A
1282 1283anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1123 1125first strand
Strand 2
A
1134 1136anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1142 1145first strand
Strand 2
A
1149 1152anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1159 1164first strand
Strand 2
A
1180 1185anti-parallel
Strand 3
A
1190 1194anti-parallel
Strand 4
A
1207 1209anti-parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1159 1164first strand
Strand 2
A
1180 1185anti-parallel
Strand 3
A
1220 1222anti-parallel
Strand 4
A
1238 1240anti-parallel
Strand 5
A
1246 1249anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1203 1205first strand
Strand 2
A
1262 1264anti-parallel
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