Analysis of interatomic Contacts of Structural Units in PDB entry:
9GKU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GKU entry

There are 8 chains in PDB entry 9GKU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 9	LEU 378
B	GLY 9	GLY 379
C	GLY 9	GLY 379
D	GLY 9	GLY 379
E	MET 11	GLY 379
F	GLY 9	GLY 379
G	THR 10	LEU 378
H	MET 11	LEU 378

There are120 helices in PDB entry 9GKU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	25	Right-handed 310
Helix 2	AA2	A	52	65	Right-handed alpha
Helix 3	AA3	A	66	71	Right-handed 310
Helix 4	AA4	A	80	86	Right-handed alpha
Helix 5	AA5	A	89	102	Right-handed alpha
Helix 6	AA6	A	116	137	Right-handed alpha
Helix 7	AA7	A	166	180	Right-handed alpha
Helix 8	AA8	A	194	202	Right-handed alpha
Helix 9	AA9	A	230	234	Right-handed 310
Helix 10	AB1	A	247	258	Right-handed alpha
Helix 11	AB2	A	258	267	Right-handed alpha
Helix 12	AB3	A	291	311	Right-handed alpha
Helix 13	AB4	A	326	340	Right-handed alpha
Helix 14	AB5	A	349	356	Right-handed alpha
Helix 15	AB6	A	359	378	Right-handed alpha
Helix 16	AB7	B	19	24	Right-handed 310
Helix 17	AB8	B	52	65	Right-handed alpha
Helix 18	AB9	B	66	71	Right-handed 310
Helix 19	AC1	B	80	86	Right-handed alpha
Helix 20	AC2	B	89	102	Right-handed alpha
Helix 21	AC3	B	116	137	Right-handed alpha
Helix 22	AC4	B	166	180	Right-handed alpha
Helix 23	AC5	B	194	202	Right-handed alpha
Helix 24	AC6	B	230	234	Right-handed 310
Helix 25	AC7	B	247	258	Right-handed alpha
Helix 26	AC8	B	258	267	Right-handed alpha
Helix 27	AC9	B	291	310	Right-handed alpha
Helix 28	AD1	B	326	340	Right-handed alpha
Helix 29	AD2	B	349	356	Right-handed alpha
Helix 30	AD3	B	359	379	Right-handed alpha
Helix 31	AD4	C	19	24	Right-handed 310
Helix 32	AD5	C	52	65	Right-handed alpha
Helix 33	AD6	C	66	71	Right-handed 310
Helix 34	AD7	C	80	86	Right-handed alpha
Helix 35	AD8	C	89	102	Right-handed alpha
Helix 36	AD9	C	116	137	Right-handed alpha
Helix 37	AE1	C	166	180	Right-handed alpha
Helix 38	AE2	C	194	201	Right-handed alpha
Helix 39	AE3	C	230	234	Right-handed 310
Helix 40	AE4	C	247	258	Right-handed alpha
Helix 41	AE5	C	258	267	Right-handed alpha
Helix 42	AE6	C	291	310	Right-handed alpha
Helix 43	AE7	C	326	340	Right-handed alpha
Helix 44	AE8	C	349	356	Right-handed alpha
Helix 45	AE9	C	359	378	Right-handed alpha
Helix 46	AF1	D	19	25	Right-handed 310
Helix 47	AF2	D	52	65	Right-handed alpha
Helix 48	AF3	D	66	71	Right-handed 310
Helix 49	AF4	D	80	86	Right-handed alpha
Helix 50	AF5	D	89	102	Right-handed alpha
Helix 51	AF6	D	116	137	Right-handed alpha
Helix 52	AF7	D	166	180	Right-handed alpha
Helix 53	AF8	D	194	202	Right-handed alpha
Helix 54	AF9	D	230	234	Right-handed 310
Helix 55	AG1	D	247	258	Right-handed alpha
Helix 56	AG2	D	258	267	Right-handed alpha
Helix 57	AG3	D	291	310	Right-handed alpha
Helix 58	AG4	D	326	340	Right-handed alpha
Helix 59	AG5	D	349	356	Right-handed alpha
Helix 60	AG6	D	359	378	Right-handed alpha
Helix 61	AG7	E	19	24	Right-handed 310
Helix 62	AG8	E	52	65	Right-handed alpha
Helix 63	AG9	E	66	71	Right-handed 310
Helix 64	AH1	E	80	86	Right-handed alpha
Helix 65	AH2	E	89	102	Right-handed alpha
Helix 66	AH3	E	116	137	Right-handed alpha
Helix 67	AH4	E	166	180	Right-handed alpha
Helix 68	AH5	E	194	202	Right-handed alpha
Helix 69	AH6	E	230	234	Right-handed 310
Helix 70	AH7	E	247	258	Right-handed alpha
Helix 71	AH8	E	258	267	Right-handed alpha
Helix 72	AH9	E	291	310	Right-handed alpha
Helix 73	AI1	E	326	340	Right-handed alpha
Helix 74	AI2	E	349	356	Right-handed alpha
Helix 75	AI3	E	359	378	Right-handed alpha
Helix 76	AI4	F	19	25	Right-handed 310
Helix 77	AI5	F	52	65	Right-handed alpha
Helix 78	AI6	F	66	71	Right-handed 310
Helix 79	AI7	F	80	86	Right-handed alpha
Helix 80	AI8	F	89	102	Right-handed alpha
Helix 81	AI9	F	116	137	Right-handed alpha
Helix 82	AJ1	F	166	180	Right-handed alpha
Helix 83	AJ2	F	194	202	Right-handed alpha
Helix 84	AJ3	F	230	234	Right-handed 310
Helix 85	AJ4	F	247	258	Right-handed alpha
Helix 86	AJ5	F	258	267	Right-handed alpha
Helix 87	AJ6	F	291	310	Right-handed alpha
Helix 88	AJ7	F	326	340	Right-handed alpha
Helix 89	AJ8	F	349	356	Right-handed alpha
Helix 90	AJ9	F	359	378	Right-handed alpha
Helix 91	AK1	G	19	24	Right-handed 310
Helix 92	AK2	G	52	65	Right-handed alpha
Helix 93	AK3	G	66	71	Right-handed 310
Helix 94	AK4	G	80	85	Right-handed alpha
Helix 95	AK5	G	89	102	Right-handed alpha
Helix 96	AK6	G	116	137	Right-handed alpha
Helix 97	AK7	G	166	180	Right-handed alpha
Helix 98	AK8	G	194	202	Right-handed alpha
Helix 99	AK9	G	230	234	Right-handed 310
Helix 100	AL1	G	247	258	Right-handed alpha
Helix 101	AL2	G	258	267	Right-handed alpha
Helix 102	AL3	G	291	310	Right-handed alpha
Helix 103	AL4	G	326	340	Right-handed alpha
Helix 104	AL5	G	349	356	Right-handed alpha
Helix 105	AL6	G	359	378	Right-handed alpha
Helix 106	AL7	H	19	24	Right-handed 310
Helix 107	AL8	H	52	65	Right-handed alpha
Helix 108	AL9	H	66	71	Right-handed 310
Helix 109	AM1	H	80	85	Right-handed alpha
Helix 110	AM2	H	89	102	Right-handed alpha
Helix 111	AM3	H	116	137	Right-handed alpha
Helix 112	AM4	H	166	180	Right-handed alpha
Helix 113	AM5	H	194	201	Right-handed alpha
Helix 114	AM6	H	230	234	Right-handed 310
Helix 115	AM7	H	247	258	Right-handed alpha
Helix 116	AM8	H	258	267	Right-handed alpha
Helix 117	AM9	H	291	311	Right-handed alpha
Helix 118	AN1	H	326	340	Right-handed alpha
Helix 119	AN2	H	349	356	Right-handed alpha
Helix 120	AN3	H	359	377	Right-handed alpha

There are 23 sheets in PDB entry 9GKU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	17	first strand
Strand 2	A	142	145	parallel
Strand 3	A	314	318	parallel
Strand 4	A	270	275	parallel
Strand 5	A	184	188	parallel
Strand 6	A	207	214	parallel
Strand 7	A	237	242	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	31	first strand
Strand 2	A	34	35	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	106	first strand
Strand 2	A	112	114	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	17	first strand
Strand 2	B	142	145	parallel
Strand 3	B	314	318	parallel
Strand 4	B	270	275	parallel
Strand 5	B	184	188	parallel
Strand 6	B	207	214	parallel
Strand 7	B	237	242	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	31	first strand
Strand 2	B	34	35	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	106	first strand
Strand 2	B	112	113	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	17	first strand
Strand 2	C	142	145	parallel
Strand 3	C	314	318	parallel
Strand 4	C	270	275	parallel
Strand 5	C	184	188	parallel
Strand 6	C	207	214	parallel
Strand 7	C	237	242	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	31	first strand
Strand 2	C	34	35	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	104	106	first strand
Strand 2	C	112	114	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	17	first strand
Strand 2	D	142	145	parallel
Strand 3	D	314	318	parallel
Strand 4	D	270	275	parallel
Strand 5	D	184	188	parallel
Strand 6	D	207	214	parallel
Strand 7	D	237	242	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	31	first strand
Strand 2	D	34	35	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	105	first strand
Strand 2	D	113	114	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	14	17	first strand
Strand 2	E	142	145	parallel
Strand 3	E	314	318	parallel
Strand 4	E	270	275	parallel
Strand 5	E	184	188	parallel
Strand 6	E	207	214	parallel
Strand 7	E	237	242	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	31	first strand
Strand 2	E	34	35	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	104	106	first strand
Strand 2	E	112	114	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	14	17	first strand
Strand 2	F	142	145	parallel
Strand 3	F	314	318	parallel
Strand 4	F	270	275	parallel
Strand 5	F	184	188	parallel
Strand 6	F	207	214	parallel
Strand 7	F	237	242	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	31	first strand
Strand 2	F	34	35	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	14	17	first strand
Strand 2	G	142	145	parallel
Strand 3	G	314	318	parallel
Strand 4	G	271	275	parallel
Strand 5	G	184	188	parallel
Strand 6	G	207	214	parallel
Strand 7	G	237	242	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	30	31	first strand
Strand 2	G	34	35	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	104	106	first strand
Strand 2	G	112	114	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	14	17	first strand
Strand 2	H	142	145	parallel
Strand 3	H	314	318	parallel
Strand 4	H	270	275	parallel
Strand 5	H	184	188	parallel
Strand 6	H	207	214	parallel
Strand 7	H	237	242	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	30	31	first strand
Strand 2	H	34	35	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	104	105	first strand
Strand 2	H	113	114	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GKU

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GKU