Analysis of interatomic Contacts of Structural Units in PDB entry:
9GKV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GKV entry

There are 2 chains in PDB entry 9GKV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 THR 11TYR 318
A
 VAL 9TYR 318
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 9GKV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
18 23Right-handed 310
Helix 2
AA2
B
35 51Right-handed alpha
Helix 3
AA3
B
51 57Right-handed alpha
Helix 4
AA4
B
67 71Right-handed 310
Helix 5
AA5
B
76 85Right-handed alpha
Helix 6
AA6
B
89 97Right-handed alpha
Helix 7
AA7
B
101 126Right-handed alpha
Helix 8
AA8
B
150 161Right-handed alpha
Helix 9
AA9
B
178 186Right-handed alpha
Helix 10
AB1
B
220 240Right-handed alpha
Helix 11
AB2
B
264 282Right-handed alpha
Helix 12
AB3
B
297 300Right-handed 310
Helix 13
AB4
B
301 317Right-handed alpha
Helix 14
AB5
A
18 23Right-handed 310
Helix 15
AB6
A
35 51Right-handed alpha
Helix 16
AB7
A
51 57Right-handed alpha
Helix 17
AB8
A
67 71Right-handed 310
Helix 18
AB9
A
76 85Right-handed alpha
Helix 19
AC1
A
89 97Right-handed alpha
Helix 20
AC2
A
101 126Right-handed alpha
Helix 21
AC3
A
150 161Right-handed alpha
Helix 22
AC4
A
178 186Right-handed alpha
Helix 23
AC5
A
220 240Right-handed alpha
Helix 24
AC6
A
264 282Right-handed alpha
Helix 25
AC7
A
297 300Right-handed 310
Helix 26
AC8
A
301 317Right-handed alpha
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There are 2 sheets in PDB entry 9GKV. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 61first strand
Strand 2
B
13 16parallel
Strand 3
B
127 130parallel
Strand 4
B
286 289parallel
Strand 5
B
243 247parallel
Strand 6
B
168 172parallel
Strand 7
B
191 198parallel
Strand 8
B
211 215parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 61first strand
Strand 2
A
13 16parallel
Strand 3
A
127 130parallel
Strand 4
A
286 289parallel
Strand 5
A
243 247parallel
Strand 6
A
168 172parallel
Strand 7
A
191 198parallel
Strand 8
A
211 215parallel
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