Analysis of interatomic Contacts of Structural Units in PDB entry:
9GKZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GKZ entry

There are 2 chains in PDB entry 9GKZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL -2VAL 342
B
 GLY -1VAL 342
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 9GKZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 43Right-handed alpha
Helix 2
AA2
A
56 61Right-handed alpha
Helix 3
AA3
A
64 80Right-handed alpha
Helix 4
AA4
A
104 112Right-handed alpha
Helix 5
AA5
A
123 144Right-handed alpha
Helix 6
AA6
A
172 184Right-handed alpha
Helix 7
AA7
A
199 207Right-handed alpha
Helix 8
AA8
A
237 241Right-handed 310
Helix 9
AA9
A
254 272Right-handed alpha
Helix 10
AB1
A
297 310Right-handed alpha
Helix 11
AB2
A
327 342Right-handed alpha
Helix 12
AB3
B
32 43Right-handed alpha
Helix 13
AB4
B
55 61Right-handed alpha
Helix 14
AB5
B
64 81Right-handed alpha
Helix 15
AB6
B
104 112Right-handed alpha
Helix 16
AB7
B
123 144Right-handed alpha
Helix 17
AB8
B
172 184Right-handed alpha
Helix 18
AB9
B
199 206Right-handed alpha
Helix 19
AC1
B
237 241Right-handed 310
Helix 20
AC2
B
254 272Right-handed alpha
Helix 21
AC3
B
297 311Right-handed alpha
Helix 22
AC4
B
327 341Right-handed alpha
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There are 2 sheets in PDB entry 9GKZ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
2 4parallel
Strand 3
A
148 151parallel
Strand 4
A
315 319parallel
Strand 5
A
277 281parallel
Strand 6
A
189 193parallel
Strand 7
A
212 219parallel
Strand 8
A
244 249parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 49first strand
Strand 2
B
2 5parallel
Strand 3
B
148 152parallel
Strand 4
B
315 319parallel
Strand 5
B
276 281parallel
Strand 6
B
189 193parallel
Strand 7
B
212 219parallel
Strand 8
B
244 249parallel
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