Analysis of interatomic Contacts of Structural Units in PDB entry:
9GL0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GL0 entry

There are 4 chains in PDB entry 9GL0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 26	ASP 418
B	GLU 27	ASP 418
C	GLU 27	ASP 418
D	GLU 27	LYS 417

There are 61 helices in PDB entry 9GL0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	41	Right-handed alpha
Helix 2	AA2	A	52	67	Right-handed alpha
Helix 3	AA3	A	81	94	Right-handed alpha
Helix 4	AA4	A	95	105	Right-handed alpha
Helix 5	AA5	A	110	120	Right-handed alpha
Helix 6	AA6	A	121	136	Right-handed alpha
Helix 7	AA7	A	152	166	Right-handed alpha
Helix 8	AA8	A	194	207	Right-handed alpha
Helix 9	AA9	A	223	234	Right-handed alpha
Helix 10	AB1	A	254	263	Right-handed alpha
Helix 11	AB2	A	299	320	Right-handed alpha
Helix 12	AB3	A	339	343	Right-handed alpha
Helix 13	AB4	A	351	359	Right-handed alpha
Helix 14	AB5	A	361	379	Right-handed alpha
Helix 15	AB6	A	395	414	Right-handed alpha
Helix 16	AB7	B	35	41	Right-handed alpha
Helix 17	AB8	B	52	67	Right-handed alpha
Helix 18	AB9	B	81	94	Right-handed alpha
Helix 19	AC1	B	95	105	Right-handed alpha
Helix 20	AC2	B	110	120	Right-handed alpha
Helix 21	AC3	B	121	136	Right-handed alpha
Helix 22	AC4	B	152	166	Right-handed alpha
Helix 23	AC5	B	194	206	Right-handed alpha
Helix 24	AC6	B	223	234	Right-handed alpha
Helix 25	AC7	B	254	263	Right-handed alpha
Helix 26	AC8	B	299	318	Right-handed alpha
Helix 27	AC9	B	339	343	Right-handed alpha
Helix 28	AD1	B	351	359	Right-handed alpha
Helix 29	AD2	B	361	379	Right-handed alpha
Helix 30	AD3	B	395	414	Right-handed alpha
Helix 31	AD4	C	35	41	Right-handed alpha
Helix 32	AD5	C	52	67	Right-handed alpha
Helix 33	AD6	C	76	78	Right-handed 310
Helix 34	AD7	C	81	93	Right-handed alpha
Helix 35	AD8	C	95	104	Right-handed alpha
Helix 36	AD9	C	110	120	Right-handed alpha
Helix 37	AE1	C	121	136	Right-handed alpha
Helix 38	AE2	C	152	167	Right-handed alpha
Helix 39	AE3	C	194	205	Right-handed alpha
Helix 40	AE4	C	223	234	Right-handed alpha
Helix 41	AE5	C	254	263	Right-handed alpha
Helix 42	AE6	C	299	317	Right-handed alpha
Helix 43	AE7	C	339	343	Right-handed alpha
Helix 44	AE8	C	351	359	Right-handed alpha
Helix 45	AE9	C	361	379	Right-handed alpha
Helix 46	AF1	C	395	414	Right-handed alpha
Helix 47	AF2	D	35	40	Right-handed alpha
Helix 48	AF3	D	52	67	Right-handed alpha
Helix 49	AF4	D	81	94	Right-handed alpha
Helix 50	AF5	D	95	104	Right-handed alpha
Helix 51	AF6	D	110	120	Right-handed alpha
Helix 52	AF7	D	121	135	Right-handed alpha
Helix 53	AF8	D	152	166	Right-handed alpha
Helix 54	AF9	D	194	206	Right-handed alpha
Helix 55	AG1	D	223	234	Right-handed alpha
Helix 56	AG2	D	254	262	Right-handed alpha
Helix 57	AG3	D	299	319	Right-handed alpha
Helix 58	AG4	D	339	343	Right-handed alpha
Helix 59	AG5	D	351	359	Right-handed alpha
Helix 60	AG6	D	361	379	Right-handed alpha
Helix 61	AG7	D	395	415	Right-handed alpha

There are 11 sheets in PDB entry 9GL0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	74	first strand
Strand 2	A	29	33	parallel
Strand 3	A	171	174	parallel
Strand 4	A	383	390	parallel
Strand 5	A	323	329	parallel
Strand 6	A	212	217	parallel
Strand 7	A	239	245	parallel
Strand 8	A	281	287	parallel
Strand 9	A	273	278	anti-parallel
Strand 10	A	267	268	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	144	first strand
Strand 2	A	147	149	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	344	345	first strand
Strand 2	A	348	349	anti-parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	74	first strand
Strand 2	B	30	33	parallel
Strand 3	B	171	174	parallel
Strand 4	B	383	390	parallel
Strand 5	B	323	329	parallel
Strand 6	B	212	217	parallel
Strand 7	B	239	245	parallel
Strand 8	B	281	287	parallel
Strand 9	B	273	278	anti-parallel
Strand 10	B	267	268	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	144	first strand
Strand 2	B	147	149	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	344	345	first strand
Strand 2	B	348	349	anti-parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	74	first strand
Strand 2	C	29	33	parallel
Strand 3	C	171	174	parallel
Strand 4	C	383	390	parallel
Strand 5	C	323	329	parallel
Strand 6	C	212	217	parallel
Strand 7	C	239	245	parallel
Strand 8	C	281	287	parallel
Strand 9	C	273	278	anti-parallel
Strand 10	C	267	270	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	142	first strand
Strand 2	C	148	149	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	344	345	first strand
Strand 2	C	348	349	anti-parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	72	73	first strand
Strand 2	D	29	32	parallel
Strand 3	D	171	174	parallel
Strand 4	D	383	390	parallel
Strand 5	D	323	329	parallel
Strand 6	D	212	217	parallel
Strand 7	D	239	245	parallel
Strand 8	D	281	287	parallel
Strand 9	D	273	278	anti-parallel
Strand 10	D	267	270	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	344	345	first strand
Strand 2	D	348	349	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GL0

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GL0