Analysis of interatomic Contacts of Structural Units in PDB entry:
9GL1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GL1 entry

There is 1 chain in PDB entry 9GL1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 21ASN 409
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 9GL1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 34Right-handed alpha
Helix 2
AA2
A
46 64Right-handed alpha
Helix 3
AA3
A
74 76Right-handed 310
Helix 4
AA4
A
79 91Right-handed alpha
Helix 5
AA5
A
93 104Right-handed alpha
Helix 6
AA6
A
108 115Right-handed alpha
Helix 7
AA7
A
119 133Right-handed alpha
Helix 8
AA8
A
150 164Right-handed alpha
Helix 9
AA9
A
192 202Right-handed alpha
Helix 10
AB1
A
220 231Right-handed alpha
Helix 11
AB2
A
251 259Right-handed alpha
Helix 12
AB3
A
296 316Right-handed alpha
Helix 13
AB4
A
336 340Right-handed alpha
Helix 14
AB5
A
348 356Right-handed alpha
Helix 15
AB6
A
358 376Right-handed alpha
Helix 16
AB7
A
392 409Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 9GL1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 72first strand
Strand 2
A
25 27parallel
Strand 3
A
170 172parallel
Strand 4
A
382 387parallel
Strand 5
A
319 326parallel
Strand 6
A
208 214parallel
Strand 7
A
235 242parallel
Strand 8
A
278 284parallel
Strand 9
A
270 275anti-parallel
Strand 10
A
264 265anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 140first strand
Strand 2
A
146 147anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 342first strand
Strand 2
A
345 346anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il