Analysis of interatomic Contacts of Structural Units in PDB entry:
9GLX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GLX entry

There are 23 chains in PDB entry 9GLX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1MET 168
B
 MET 1MET 168
C
 MET 1MET 168
D
 MET 1MET 168
E
 MET 1MET 168
F
 MET 1MET 168
G
 PHE 1ALA 7
K
 PHE 1ALA 7
N
 PHE 1ALA 7
Q
 PHE 1ASP 13
Q
 GLY 15GLY 15
R
 PHE 1ASP 13
R
 GLY 15GLY 15
S
 PHE 1ASP 13
S
 GLY 15GLY 15
T
 PHE 1ASP 13
T
 GLY 15GLY 15
U
 PHE 1ASP 13
U
 GLY 15GLY 15
V
 PHE 1ASP 13
V
 GLY 15GLY 15
W
 PHE 1ASP 13
W
 GLY 15GLY 15
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 9GLX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 26Right-handed alpha
Helix 2
AA2
A
61 66Right-handed 310
Helix 3
AA3
A
67 75Right-handed alpha
Helix 4
AA4
A
86 105Right-handed alpha
Helix 5
AA5
A
126 138Right-handed alpha
Helix 6
AA6
A
151 168Right-handed alpha
Helix 7
AA7
B
15 26Right-handed alpha
Helix 8
AA8
B
61 66Right-handed 310
Helix 9
AA9
B
67 75Right-handed alpha
Helix 10
AB1
B
86 104Right-handed alpha
Helix 11
AB2
B
126 138Right-handed alpha
Helix 12
AB3
B
151 168Right-handed alpha
Helix 13
AB4
C
15 26Right-handed alpha
Helix 14
AB5
C
61 66Right-handed 310
Helix 15
AB6
C
67 75Right-handed alpha
Helix 16
AB7
C
86 105Right-handed alpha
Helix 17
AB8
C
126 138Right-handed alpha
Helix 18
AB9
C
151 167Right-handed alpha
Helix 19
AC1
D
15 26Right-handed alpha
Helix 20
AC2
D
61 66Right-handed 310
Helix 21
AC3
D
67 75Right-handed alpha
Helix 22
AC4
D
86 105Right-handed alpha
Helix 23
AC5
D
126 137Right-handed alpha
Helix 24
AC6
D
151 167Right-handed alpha
Helix 25
AC7
E
15 26Right-handed alpha
Helix 26
AC8
E
61 66Right-handed 310
Helix 27
AC9
E
67 75Right-handed alpha
Helix 28
AD1
E
86 92Right-handed alpha
Helix 29
AD2
E
92 105Right-handed alpha
Helix 30
AD3
E
126 138Right-handed alpha
Helix 31
AD4
E
151 167Right-handed alpha
Helix 32
AD5
F
15 26Right-handed alpha
Helix 33
AD6
F
61 66Right-handed 310
Helix 34
AD7
F
67 75Right-handed alpha
Helix 35
AD8
F
86 105Right-handed alpha
Helix 36
AD9
F
126 138Right-handed alpha
Helix 37
AE1
F
151 168Right-handed alpha
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There are 6 sheets in PDB entry 9GLX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 46first strand
Strand 2
A
49 58anti-parallel
Strand 3
A
2 9parallel
Strand 4
A
77 83parallel
Strand 5
A
111 116parallel
Strand 6
A
141 143parallel
Strand 7
Q
2 3anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 46first strand
Strand 2
B
49 58anti-parallel
Strand 3
B
2 9parallel
Strand 4
B
77 83parallel
Strand 5
B
111 116parallel
Strand 6
B
141 143parallel
Strand 7
R
2 3anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
37 46first strand
Strand 2
C
49 58anti-parallel
Strand 3
C
2 9parallel
Strand 4
C
77 83parallel
Strand 5
C
111 116parallel
Strand 6
C
141 143parallel
Strand 7
T
2 3anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
37 46first strand
Strand 2
D
49 58anti-parallel
Strand 3
D
2 9parallel
Strand 4
D
77 83parallel
Strand 5
D
111 116parallel
Strand 6
D
141 143parallel
Strand 7
U
2 3anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
37 46first strand
Strand 2
E
49 58anti-parallel
Strand 3
E
2 9parallel
Strand 4
E
77 83parallel
Strand 5
E
111 116parallel
Strand 6
E
141 144parallel
Strand 7
V
2 3anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
37 46first strand
Strand 2
F
49 58anti-parallel
Strand 3
F
2 9parallel
Strand 4
F
77 83parallel
Strand 5
F
111 116parallel
Strand 6
F
141 143parallel
Strand 7
W
2 3anti-parallel
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