Analysis of interatomic Contacts of Structural Units in PDB entry:
9GLZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GLZ entry

There are 4 chains in PDB entry 9GLZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 168
B
 MET 1GLU 168
C
 VAL 2THR 121
D
 GLN 3VAL 122
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 9GLZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 26Right-handed alpha
Helix 2
AA2
A
70 75Right-handed alpha
Helix 3
AA3
A
86 104Right-handed alpha
Helix 4
AA4
A
126 137Right-handed alpha
Helix 5
AA5
A
151 168Right-handed alpha
Helix 6
AA6
B
15 26Right-handed alpha
Helix 7
AA7
B
69 75Right-handed alpha
Helix 8
AA8
B
86 92Right-handed alpha
Helix 9
AA9
B
92 105Right-handed alpha
Helix 10
AB1
B
126 138Right-handed alpha
Helix 11
AB2
B
151 167Right-handed alpha
Helix 12
AB3
C
28 32Right-handed 310
Helix 13
AB4
C
86 90Right-handed 310
Helix 14
AB5
C
107 111Right-handed 310
Helix 15
AB6
D
86 90Right-handed 310
Helix 16
AB7
D
107 111Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 9GLZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 143first strand
Strand 2
A
111 116parallel
Strand 3
A
77 83parallel
Strand 4
A
3 10parallel
Strand 5
A
49 57parallel
Strand 6
A
38 46anti-parallel
Strand 7
B
37 46anti-parallel
Strand 8
C
102 103first strand
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 143first strand
Strand 2
B
111 116parallel
Strand 3
B
77 83parallel
Strand 4
B
3 9parallel
Strand 5
B
49 58parallel
Strand 6
B
37 46anti-parallel
Strand 7
A
38 46anti-parallel
Strand 8
D
102 103first strand
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 6first strand
Strand 2
C
18 25anti-parallel
Strand 3
C
77 82anti-parallel
Strand 4
C
67 71anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 59first strand
Strand 2
C
45 51anti-parallel
Strand 3
C
33 39anti-parallel
Strand 4
C
91 98anti-parallel
Strand 5
C
113 114anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 59first strand
Strand 2
C
45 51anti-parallel
Strand 3
C
33 39anti-parallel
Strand 4
C
91 98anti-parallel
Strand 5
C
118 120anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
5 6first strand
Strand 2
D
18 23anti-parallel
Strand 3
D
78 82anti-parallel
Strand 4
D
67 71anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
57 59first strand
Strand 2
D
45 51anti-parallel
Strand 3
D
33 39anti-parallel
Strand 4
D
91 98anti-parallel
Strand 5
D
113 114anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
57 59first strand
Strand 2
D
45 51anti-parallel
Strand 3
D
33 39anti-parallel
Strand 4
D
91 98anti-parallel
Strand 5
D
118 120anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il