Analysis of interatomic Contacts of Structural Units in PDB entry:
9GM3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GM3 entry

There are 4 chains in PDB entry 9GM3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 375
B
 MET -20THR 56
C
 SER 3GLU 374
D
 GLY -19ALA 47
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 9GM3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 38Right-handed 310
Helix 2
AA2
A
43 61Right-handed alpha
Helix 3
AA3
A
74 77Right-handed 310
Helix 4
AA4
A
78 94Right-handed alpha
Helix 5
AA5
A
112 122Right-handed alpha
Helix 6
AA6
A
133 138Right-handed alpha
Helix 7
AA7
A
149 161Right-handed alpha
Helix 8
AA8
A
179 191Right-handed alpha
Helix 9
AA9
A
216 233Right-handed alpha
Helix 10
AB1
A
238 249Right-handed alpha
Helix 11
AB2
A
277 283Right-handed 310
Helix 12
AB3
A
298 304Right-handed alpha
Helix 13
AB4
A
305 316Right-handed alpha
Helix 14
AB5
A
317 320Right-handed 310
Helix 15
AB6
A
321 327Right-handed alpha
Helix 16
AB7
A
329 334Right-handed alpha
Helix 17
AB8
A
337 342Right-handed 310
Helix 18
AB9
A
353 375Right-handed alpha
Helix 19
AC1
B
21 32Right-handed alpha
Helix 20
AC2
B
35 53Right-handed alpha
Helix 21
AC3
C
33 38Right-handed 310
Helix 22
AC4
C
43 61Right-handed alpha
Helix 23
AC5
C
74 77Right-handed 310
Helix 24
AC6
C
78 95Right-handed alpha
Helix 25
AC7
C
112 122Right-handed alpha
Helix 26
AC8
C
133 138Right-handed alpha
Helix 27
AC9
C
149 162Right-handed alpha
Helix 28
AD1
C
179 191Right-handed alpha
Helix 29
AD2
C
216 233Right-handed alpha
Helix 30
AD3
C
238 249Right-handed alpha
Helix 31
AD4
C
277 283Right-handed 310
Helix 32
AD5
C
298 304Right-handed alpha
Helix 33
AD6
C
305 316Right-handed alpha
Helix 34
AD7
C
317 320Right-handed 310
Helix 35
AD8
C
321 326Right-handed alpha
Helix 36
AD9
C
329 334Right-handed alpha
Helix 37
AE1
C
337 342Right-handed 310
Helix 38
AE2
C
353 373Right-handed alpha
Helix 39
AE3
D
25 32Right-handed alpha
Helix 40
AE4
D
35 46Right-handed alpha
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There are 2 sheets in PDB entry 9GM3. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 198first strand
Strand 2
A
167 173parallel
Strand 3
A
125 129parallel
Strand 4
A
99 106parallel
Strand 5
A
65 71parallel
Strand 6
A
9 13parallel
Strand 7
A
265 268parallel
Strand 8
A
273 275anti-parallel
Strand 9
A
289 293anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
195 198first strand
Strand 2
C
167 173parallel
Strand 3
C
124 129parallel
Strand 4
C
99 106parallel
Strand 5
C
65 71parallel
Strand 6
C
9 13parallel
Strand 7
C
265 268parallel
Strand 8
C
273 275anti-parallel
Strand 9
C
289 293anti-parallel
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