Analysis of interatomic Contacts of Structural Units in PDB entry:
9GM9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GM9 entry

There are 13 chains in PDB entry 9GM9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 2	GLY 1468
B	ILE 2	GLY 1468
C	MET 1	TYR 440
D	MET 1	ALA 318
E	SER 2	VAL 213
F	PHE 9	ARG 206
G	THR 2	ASP 35
G	LEU 37	ASN 73
I	THR 2	ASP 35
I	LEU 37	ASN 73
K	G 10	T 56
L	A 36	C 81
Q	ARG 85	VAL 213

There are144 helices in PDB entry 9GM9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	39	52	Right-handed alpha
Helix 2	AA2	A	77	81	Right-handed 310
Helix 3	AA3	A	131	136	Right-handed alpha
Helix 4	AA4	A	149	159	Right-handed alpha
Helix 5	AA5	A	170	181	Right-handed alpha
Helix 6	AA6	A	190	207	Right-handed alpha
Helix 7	AA7	A	210	216	Right-handed alpha
Helix 8	AA8	A	216	222	Right-handed alpha
Helix 9	AA9	A	226	311	Right-handed alpha
Helix 10	AB1	A	567	618	Right-handed alpha
Helix 11	AB2	A	624	662	Right-handed alpha
Helix 12	AB3	A	671	681	Right-handed alpha
Helix 13	AB4	A	686	690	Right-handed alpha
Helix 14	AB5	A	697	706	Right-handed alpha
Helix 15	AB6	A	707	710	Right-handed 310
Helix 16	AB7	A	719	725	Right-handed alpha
Helix 17	AB8	A	780	782	Right-handed 310
Helix 18	AB9	A	783	825	Right-handed alpha
Helix 19	AC1	A	826	829	Right-handed 310
Helix 20	AC2	A	833	867	Right-handed alpha
Helix 21	AC3	A	1083	1124	Right-handed alpha
Helix 22	AC4	A	1127	1132	Right-handed alpha
Helix 23	AC5	A	1135	1141	Right-handed 310
Helix 24	AC6	A	1142	1161	Right-handed alpha
Helix 25	AC7	A	1165	1175	Right-handed alpha
Helix 26	AC8	A	1180	1197	Right-handed alpha
Helix 27	AC9	A	1207	1226	Right-handed alpha
Helix 28	AD1	A	1237	1261	Right-handed alpha
Helix 29	AD2	A	1280	1293	Right-handed alpha
Helix 30	AD3	A	1294	1296	Right-handed 310
Helix 31	AD4	A	1297	1303	Right-handed alpha
Helix 32	AD5	A	1307	1319	Right-handed alpha
Helix 33	AD6	A	1329	1339	Right-handed alpha
Helix 34	AD7	A	1340	1342	Right-handed 310
Helix 35	AD8	A	1361	1365	Right-handed 310
Helix 36	AD9	A	1366	1390	Right-handed alpha
Helix 37	AE1	A	1391	1393	Right-handed 310
Helix 38	AE2	A	1407	1411	Right-handed 310
Helix 39	AE3	A	1412	1426	Right-handed alpha
Helix 40	AE4	B	39	52	Right-handed alpha
Helix 41	AE5	B	77	81	Right-handed 310
Helix 42	AE6	B	131	136	Right-handed alpha
Helix 43	AE7	B	149	159	Right-handed alpha
Helix 44	AE8	B	170	181	Right-handed alpha
Helix 45	AE9	B	190	207	Right-handed alpha
Helix 46	AF1	B	210	216	Right-handed alpha
Helix 47	AF2	B	216	222	Right-handed alpha
Helix 48	AF3	B	225	311	Right-handed alpha
Helix 49	AF4	B	567	618	Right-handed alpha
Helix 50	AF5	B	624	663	Right-handed alpha
Helix 51	AF6	B	670	681	Right-handed alpha
Helix 52	AF7	B	686	690	Right-handed alpha
Helix 53	AF8	B	697	706	Right-handed alpha
Helix 54	AF9	B	707	710	Right-handed 310
Helix 55	AG1	B	719	725	Right-handed alpha
Helix 56	AG2	B	782	826	Right-handed alpha
Helix 57	AG3	B	827	829	Right-handed 310
Helix 58	AG4	B	833	867	Right-handed alpha
Helix 59	AG5	B	1083	1124	Right-handed alpha
Helix 60	AG6	B	1135	1141	Right-handed 310
Helix 61	AG7	B	1142	1161	Right-handed alpha
Helix 62	AG8	B	1165	1174	Right-handed alpha
Helix 63	AG9	B	1180	1196	Right-handed alpha
Helix 64	AH1	B	1200	1204	Right-handed 310
Helix 65	AH2	B	1207	1260	Right-handed alpha
Helix 66	AH3	B	1280	1292	Right-handed alpha
Helix 67	AH4	B	1293	1298	Right-handed alpha
Helix 68	AH5	B	1308	1319	Right-handed alpha
Helix 69	AH6	B	1332	1338	Right-handed alpha
Helix 70	AH7	B	1339	1342	Right-handed 310
Helix 71	AH8	B	1361	1365	Right-handed 310
Helix 72	AH9	B	1366	1389	Right-handed alpha
Helix 73	AI1	B	1407	1411	Right-handed 310
Helix 74	AI2	B	1412	1426	Right-handed alpha
Helix 75	AI3	C	7	19	Right-handed alpha
Helix 76	AI4	C	25	41	Right-handed alpha
Helix 77	AI5	C	49	63	Right-handed alpha
Helix 78	AI6	C	69	84	Right-handed alpha
Helix 79	AI7	C	104	116	Right-handed alpha
Helix 80	AI8	C	121	146	Right-handed alpha
Helix 81	AI9	C	148	156	Right-handed alpha
Helix 82	AJ1	C	156	163	Right-handed alpha
Helix 83	AJ2	C	163	243	Right-handed alpha
Helix 84	AJ3	C	246	291	Right-handed alpha
Helix 85	AJ4	C	296	308	Right-handed alpha
Helix 86	AJ5	C	309	311	Right-handed 310
Helix 87	AJ6	C	353	373	Right-handed alpha
Helix 88	AJ7	C	377	387	Right-handed alpha
Helix 89	AJ8	C	388	389	Right-handed 310
Helix 90	AJ9	C	390	392	Right-handed 310
Helix 91	AK1	C	393	406	Right-handed alpha
Helix 92	AK2	C	411	417	Right-handed 310
Helix 93	AK3	D	7	19	Right-handed alpha
Helix 94	AK4	D	25	41	Right-handed alpha
Helix 95	AK5	D	49	63	Right-handed alpha
Helix 96	AK6	D	69	84	Right-handed alpha
Helix 97	AK7	D	104	116	Right-handed alpha
Helix 98	AK8	D	121	146	Right-handed alpha
Helix 99	AK9	D	148	156	Right-handed alpha
Helix 100	AL1	D	156	163	Right-handed alpha
Helix 101	AL2	D	163	243	Right-handed alpha
Helix 102	AL3	D	246	291	Right-handed alpha
Helix 103	AL4	D	296	308	Right-handed alpha
Helix 104	AL5	D	309	311	Right-handed 310
Helix 105	AL6	E	5	9	Right-handed 310
Helix 106	AL7	E	11	19	Right-handed alpha
Helix 107	AL8	E	22	32	Right-handed alpha
Helix 108	AL9	E	40	50	Right-handed alpha
Helix 109	AM1	E	50	59	Right-handed alpha
Helix 110	AM2	E	89	105	Right-handed alpha
Helix 111	AM3	E	106	112	Right-handed 310
Helix 112	AM4	E	117	128	Right-handed alpha
Helix 113	AM5	E	129	134	Right-handed alpha
Helix 114	AM6	E	135	137	Right-handed 310
Helix 115	AM7	E	144	165	Right-handed alpha
Helix 116	AM8	E	182	189	Right-handed 310
Helix 117	AM9	E	196	208	Right-handed alpha
Helix 118	AN1	F	11	20	Right-handed alpha
Helix 119	AN2	F	22	32	Right-handed alpha
Helix 120	AN3	F	40	60	Right-handed alpha
Helix 121	AN4	F	89	103	Right-handed alpha
Helix 122	AN5	F	106	112	Right-handed alpha
Helix 123	AN6	F	117	128	Right-handed alpha
Helix 124	AN7	F	129	138	Right-handed alpha
Helix 125	AN8	F	144	166	Right-handed alpha
Helix 126	AN9	F	182	188	Right-handed 310
Helix 127	AO1	F	196	206	Right-handed alpha
Helix 128	AO2	G	3	16	Right-handed alpha
Helix 129	AO3	G	27	32	Right-handed alpha
Helix 130	AO4	G	35	50	Right-handed alpha
Helix 131	AO5	G	55	60	Right-handed alpha
Helix 132	AO6	G	66	71	Right-handed alpha
Helix 133	AO7	I	3	16	Right-handed alpha
Helix 134	AO8	I	35	50	Right-handed alpha
Helix 135	AO9	I	55	61	Right-handed alpha
Helix 136	AP1	I	64	73	Right-handed alpha
Helix 137	AP2	Q	89	105	Right-handed alpha
Helix 138	AP3	Q	106	112	Right-handed 310
Helix 139	AP4	Q	117	128	Right-handed alpha
Helix 140	AP5	Q	129	134	Right-handed alpha
Helix 141	AP6	Q	135	137	Right-handed 310
Helix 142	AP7	Q	144	165	Right-handed alpha
Helix 143	AP8	Q	182	189	Right-handed 310
Helix 144	AP9	Q	196	208	Right-handed alpha

There are 21 sheets in PDB entry 9GM9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	24	first strand
Strand 2	A	6	15	anti-parallel
Strand 3	A	85	93	anti-parallel
Strand 4	A	99	109	anti-parallel
Strand 5	A	115	124	anti-parallel
Strand 6	A	164	167	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1402	1405	first strand
Strand 2	A	1429	1434	parallel
Strand 3	A	29	34	parallel
Strand 4	A	1444	1452	parallel
Strand 5	A	1457	1465	anti-parallel
Strand 6	C	430	433	anti-parallel
Strand 7	C	422	426	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	138	first strand
Strand 2	A	146	147	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	684	685	first strand
Strand 2	A	712	713	anti-parallel
Strand 3	A	733	737	parallel
Strand 4	B	766	771	anti-parallel
Strand 5	B	757	763	anti-parallel
Strand 6	B	750	754	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	751	754	first strand
Strand 2	A	757	763	anti-parallel
Strand 3	A	766	771	anti-parallel
Strand 4	B	733	737	anti-parallel
Strand 5	B	712	713	parallel
Strand 6	B	684	685	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1263	1267	first strand
Strand 2	A	1270	1279	anti-parallel
Strand 3	A	1344	1352	anti-parallel
Strand 4	A	1357	1359	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	24	first strand
Strand 2	B	6	15	anti-parallel
Strand 3	B	85	93	anti-parallel
Strand 4	B	99	108	anti-parallel
Strand 5	B	116	124	anti-parallel
Strand 6	B	164	167	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1402	1405	first strand
Strand 2	B	1429	1434	parallel
Strand 3	B	29	33	parallel
Strand 4	B	1444	1452	parallel
Strand 5	B	1457	1465	anti-parallel
Strand 6	C	348	350	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	138	first strand
Strand 2	B	146	147	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1270	1279	first strand
Strand 2	B	1344	1352	anti-parallel
Strand 3	B	1357	1359	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	24	first strand
Strand 2	D	22	24	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	48	first strand
Strand 2	C	100	103	anti-parallel
Strand 3	C	87	90	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	85	87	first strand
Strand 2	C	313	318	anti-parallel
Strand 3	E	210	212	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	323	325	first strand
Strand 2	F	85	87	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	48	first strand
Strand 2	D	100	103	anti-parallel
Strand 3	D	87	90	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	86	87	first strand
Strand 2	D	313	317	anti-parallel
Strand 3	Q	210	212	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	63	67	first strand
Strand 2	E	73	77	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	114	116	first strand
Strand 2	E	177	180	anti-parallel
Strand 3	E	168	170	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	63	67	first strand
Strand 2	F	73	77	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	115	116	first strand
Strand 2	F	177	180	anti-parallel
Strand 3	F	168	170	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	114	116	first strand
Strand 2	Q	177	180	anti-parallel
Strand 3	Q	168	170	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GM9

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GM9