Analysis of interatomic Contacts of Structural Units in PDB entry:
9GMB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GMB entry

There are 6 chains in PDB entry 9GMB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	SER 5	ARG 327
E	VAL 9	ILE 213
F	GLU 7	GLU 209
I	ASP 4	ASN 49
J	ARG 3	ASN 49
D	GLN 6	ASP 292

There are 50 helices in PDB entry 9GMB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	9	19	Right-handed alpha
Helix 2	AA2	C	25	42	Right-handed alpha
Helix 3	AA3	C	49	64	Right-handed alpha
Helix 4	AA4	C	66	68	Right-handed 310
Helix 5	AA5	C	69	84	Right-handed alpha
Helix 6	AA6	C	104	116	Right-handed alpha
Helix 7	AA7	C	121	146	Right-handed alpha
Helix 8	AA8	C	148	156	Right-handed alpha
Helix 9	AA9	C	156	163	Right-handed alpha
Helix 10	AB1	C	163	196	Right-handed alpha
Helix 11	AB2	C	200	241	Right-handed alpha
Helix 12	AB3	C	246	289	Right-handed alpha
Helix 13	AB4	C	295	307	Right-handed alpha
Helix 14	AB5	C	308	311	Right-handed 310
Helix 15	AB6	E	11	19	Right-handed alpha
Helix 16	AB7	E	22	31	Right-handed alpha
Helix 17	AB8	E	40	50	Right-handed alpha
Helix 18	AB9	E	50	59	Right-handed alpha
Helix 19	AC1	E	89	105	Right-handed alpha
Helix 20	AC2	E	106	112	Right-handed 310
Helix 21	AC3	E	117	125	Right-handed alpha
Helix 22	AC4	E	129	138	Right-handed alpha
Helix 23	AC5	E	144	165	Right-handed alpha
Helix 24	AC6	E	182	187	Right-handed 310
Helix 25	AC7	E	188	193	Right-handed alpha
Helix 26	AC8	E	196	208	Right-handed alpha
Helix 27	AC9	F	11	19	Right-handed alpha
Helix 28	AD1	F	22	32	Right-handed alpha
Helix 29	AD2	F	40	50	Right-handed alpha
Helix 30	AD3	F	50	59	Right-handed alpha
Helix 31	AD4	F	89	104	Right-handed alpha
Helix 32	AD5	F	106	112	Right-handed alpha
Helix 33	AD6	F	116	128	Right-handed alpha
Helix 34	AD7	F	129	138	Right-handed alpha
Helix 35	AD8	F	144	166	Right-handed alpha
Helix 36	AD9	F	182	192	Right-handed 310
Helix 37	AE1	F	196	208	Right-handed alpha
Helix 38	AE2	I	10	49	Right-handed alpha
Helix 39	AE3	J	10	49	Right-handed alpha
Helix 40	AE4	D	9	19	Right-handed alpha
Helix 41	AE5	D	25	40	Right-handed alpha
Helix 42	AE6	D	49	63	Right-handed alpha
Helix 43	AE7	D	69	85	Right-handed alpha
Helix 44	AE8	D	104	116	Right-handed alpha
Helix 45	AE9	D	121	146	Right-handed alpha
Helix 46	AF1	D	148	156	Right-handed alpha
Helix 47	AF2	D	156	163	Right-handed alpha
Helix 48	AF3	D	163	196	Right-handed alpha
Helix 49	AF4	D	196	241	Right-handed alpha
Helix 50	AF5	D	246	289	Right-handed alpha

There are 11 sheets in PDB entry 9GMB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	24	first strand
Strand 2	D	22	24	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	48	first strand
Strand 2	C	100	103	anti-parallel
Strand 3	C	87	90	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	313	315	first strand
Strand 2	E	210	212	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	317	318	first strand
Strand 2	E	85	86	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	323	325	first strand
Strand 2	F	85	87	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	63	66	first strand
Strand 2	E	74	77	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	114	116	first strand
Strand 2	E	177	180	anti-parallel
Strand 3	E	168	170	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	63	67	first strand
Strand 2	F	73	77	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	114	115	first strand
Strand 2	F	178	180	anti-parallel
Strand 3	F	168	170	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	5	9	first strand
Strand 2	J	5	9	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	48	first strand
Strand 2	D	99	103	anti-parallel
Strand 3	D	87	91	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GMB

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GMB