Analysis of interatomic Contacts of Structural Units in PDB entry:
9GMK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GMK entry

There are 11 chains in PDB entry 9GMK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 40ARG 134
B
 LYS 20GLY 102
C
 LYS 15LYS 118
D
 LYS 34LYS 125
E
 HIS 39ALA 135
F
 ASN 25GLY 102
G
 ALA 14LYS 118
H
 SER 32ALA 124
K
 GLU 10ARG 362
L
 A 25 T 172
M
 A 26 T 173
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 9GMK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 57Right-handed alpha
Helix 2
AA2
A
63 76Right-handed alpha
Helix 3
AA3
A
85 114Right-handed alpha
Helix 4
AA4
A
120 132Right-handed alpha
Helix 5
AA5
B
25 29Right-handed 310
Helix 6
AA6
B
30 42Right-handed alpha
Helix 7
AA7
B
50 76Right-handed alpha
Helix 8
AA8
B
82 93Right-handed alpha
Helix 9
AA9
C
16 22Right-handed alpha
Helix 10
AB1
C
27 36Right-handed alpha
Helix 11
AB2
C
46 73Right-handed alpha
Helix 12
AB3
C
79 90Right-handed alpha
Helix 13
AB4
C
90 97Right-handed alpha
Helix 14
AB5
D
37 49Right-handed alpha
Helix 15
AB6
D
56 84Right-handed alpha
Helix 16
AB7
D
90 102Right-handed alpha
Helix 17
AB8
D
103 124Right-handed alpha
Helix 18
AB9
E
44 55Right-handed alpha
Helix 19
AC1
E
63 76Right-handed alpha
Helix 20
AC2
E
85 114Right-handed alpha
Helix 21
AC3
E
120 132Right-handed alpha
Helix 22
AC4
F
25 29Right-handed 310
Helix 23
AC5
F
30 41Right-handed alpha
Helix 24
AC6
F
50 76Right-handed alpha
Helix 25
AC7
F
82 93Right-handed alpha
Helix 26
AC8
G
16 22Right-handed alpha
Helix 27
AC9
G
27 36Right-handed alpha
Helix 28
AD1
G
46 73Right-handed alpha
Helix 29
AD2
G
79 89Right-handed alpha
Helix 30
AD3
G
90 98Right-handed alpha
Helix 31
AD4
G
112 116Right-handed 310
Helix 32
AD5
H
37 49Right-handed alpha
Helix 33
AD6
H
55 84Right-handed alpha
Helix 34
AD7
H
90 102Right-handed alpha
Helix 35
AD8
H
103 124Right-handed alpha
Helix 36
AD9
K
11 38Right-handed alpha
Helix 37
AE1
K
48 54Right-handed alpha
Helix 38
AE2
K
54 76Right-handed alpha
Helix 39
AE3
K
81 99Right-handed alpha
Helix 40
AE4
K
107 114Right-handed alpha
Helix 41
AE5
K
146 158Right-handed alpha
Helix 42
AE6
K
171 176Right-handed alpha
Helix 43
AE7
K
250 261Right-handed alpha
Helix 44
AE8
K
271 277Right-handed alpha
Helix 45
AE9
K
301 307Right-handed alpha
Helix 46
AF1
K
314 327Right-handed alpha
Helix 47
AF2
K
338 344Right-handed alpha
Helix 48
AF3
K
350 355Right-handed alpha
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There are 3 sheets in PDB entry 9GMK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 119first strand
Strand 2
B
45 46parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
183 185first strand
Strand 2
K
163 166parallel
Strand 3
K
102 106parallel
Strand 4
K
263 267parallel
Strand 5
K
292 296parallel
Strand 6
K
310 311parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
192 194first strand
Strand 2
K
203 205anti-parallel
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