Analysis of interatomic Contacts of Structural Units in PDB entry:
9GML


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GML entry

There are 4 chains in PDB entry 9GML (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 2SER 100
B
 ASN 5GLU 126
C
 MET 1LEU 219
C
 ILE 221PHE 570
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 9GML. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 27Right-handed alpha
Helix 2
AA2
A
31 50Right-handed alpha
Helix 3
AA3
A
52 60Right-handed alpha
Helix 4
AA4
A
61 63Right-handed 310
Helix 5
AA5
A
72 76Right-handed 310
Helix 6
AA6
B
109 120Right-handed alpha
Helix 7
AA7
C
5 12Right-handed alpha
Helix 8
AA8
C
144 151Right-handed alpha
Helix 9
AA9
C
165 171Right-handed alpha
Helix 10
AB1
C
175 187Right-handed alpha
Helix 11
AB2
C
188 190Right-handed 310
Helix 12
AB3
C
204 213Right-handed alpha
Helix 13
AB4
C
222 226Right-handed 310
Helix 14
AB5
C
228 243Right-handed alpha
Helix 15
AB6
C
258 267Right-handed alpha
Helix 16
AB7
C
285 293Right-handed 310
Helix 17
AB8
C
310 323Right-handed alpha
Helix 18
AB9
C
329 340Right-handed alpha
Helix 19
AC1
C
341 354Right-handed alpha
Helix 20
AC2
C
369 371Right-handed 310
Helix 21
AC3
C
372 389Right-handed alpha
Helix 22
AC4
C
399 408Right-handed alpha
Helix 23
AC5
C
412 419Right-handed alpha
Helix 24
AC6
C
439 443Right-handed 310
Helix 25
AC7
C
480 483Right-handed 310
Helix 26
AC8
C
485 489Right-handed 310
Helix 27
AC9
C
497 502Right-handed alpha
Helix 28
AD1
C
503 509Right-handed alpha
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There are 11 sheets in PDB entry 9GML. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 86first strand
Strand 2
A
89 96anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 20first strand
Strand 2
C
2 4anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 56first strand
Strand 2
B
27 34anti-parallel
Strand 3
B
82 89anti-parallel
Strand 4
B
65 67anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 42first strand
Strand 2
B
75 77anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 96first strand
Strand 2
B
105 106anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
19 21first strand
Strand 2
C
28 30anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 34first strand
Strand 2
C
81 90parallel
Strand 3
C
69 78anti-parallel
Strand 4
C
120 123parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
93 98first strand
Strand 2
C
81 90anti-parallel
Strand 3
C
69 78anti-parallel
Strand 4
C
128 131parallel
Strand 5
C
434 438anti-parallel
Strand 6
C
449 452anti-parallel
Strand 7
C
455 461anti-parallel
Strand 8
C
475 478anti-parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
133 139first strand
Strand 2
C
154 160parallel
Strand 3
C
193 199parallel
Strand 4
C
218 221parallel
Strand 5
C
245 248parallel
Strand 6
C
271 273parallel
Strand 7
C
296 297parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
492 496first strand
Strand 2
C
513 517parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
538 539first strand
Strand 2
C
546 547anti-parallel
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