Analysis of interatomic Contacts of Structural Units in PDB entry:
9GMU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GMU entry

There are 4 chains in PDB entry 9GMU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 132LYS 315
B
 ASP 132LYS 315
C
 GLN 2SER 123
D
 GLN 2SER 123
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 9GMU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
146 165Right-handed alpha
Helix 2
AA2
A
185 192Right-handed alpha
Helix 3
AA3
A
194 200Right-handed alpha
Helix 4
AA4
A
210 222Right-handed alpha
Helix 5
AA5
A
224 228Right-handed 310
Helix 6
AA6
A
251 254Right-handed 310
Helix 7
AA7
A
255 262Right-handed alpha
Helix 8
AA8
A
273 276Right-handed 310
Helix 9
AA9
A
277 288Right-handed alpha
Helix 10
AB1
A
291 294Right-handed 310
Helix 11
AB2
A
302 315Right-handed alpha
Helix 12
AB3
B
146 165Right-handed alpha
Helix 13
AB4
B
185 192Right-handed alpha
Helix 14
AB5
B
194 200Right-handed alpha
Helix 15
AB6
B
210 223Right-handed alpha
Helix 16
AB7
B
251 254Right-handed 310
Helix 17
AB8
B
255 262Right-handed alpha
Helix 18
AB9
B
277 288Right-handed alpha
Helix 19
AC1
B
291 294Right-handed 310
Helix 20
AC2
B
302 315Right-handed alpha
Helix 21
AC3
C
29 31Right-handed 310
Helix 22
AC4
C
87 91Right-handed 310
Helix 23
AC5
C
102 104Right-handed 310
Helix 24
AC6
D
29 31Right-handed 310
Helix 25
AC7
D
87 91Right-handed 310
Helix 26
AC8
D
102 104Right-handed 310
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There are 6 sheets in PDB entry 9GMU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 184first strand
Strand 2
A
169 176anti-parallel
Strand 3
A
133 140parallel
Strand 4
A
234 241parallel
Strand 5
A
265 270parallel
Strand 6
A
296 298parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 184first strand
Strand 2
B
169 176anti-parallel
Strand 3
B
133 140parallel
Strand 4
B
234 241parallel
Strand 5
B
265 270parallel
Strand 6
B
296 298parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 8first strand
Strand 2
C
19 26anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
68 73anti-parallel
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There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 60first strand
Strand 2
C
46 53anti-parallel
Strand 3
C
33 40anti-parallel
Strand 4
C
92 100anti-parallel
Strand 5
C
117 122anti-parallel
Strand 6
C
11 14parallel
Strand 7
D
11 14anti-parallel
Strand 8
D
117 122parallel
Strand 9
D
92 100anti-parallel
Strand 10
D
33 40anti-parallel
Strand 11
D
46 53anti-parallel
Strand 12
D
57 60anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
112 113first strand
Strand 2
C
92 100anti-parallel
Strand 3
C
117 122anti-parallel
Strand 4
C
11 14parallel
Strand 5
D
11 14anti-parallel
Strand 6
D
117 122parallel
Strand 7
D
92 100anti-parallel
Strand 8
D
112 113anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 8first strand
Strand 2
D
19 26anti-parallel
Strand 3
D
78 83anti-parallel
Strand 4
D
68 73anti-parallel
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