Analysis of interatomic Contacts of Structural Units in PDB entry:
9GMZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GMZ entry

There are 15 chains in PDB entry 9GMZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 5	GLN 337
B	THR 5	ALA 347
C	THR 5	ALA 347
D	THR 5	ALA 347
E	THR 5	ALA 347
F	THR 5	ALA 347
G	THR 5	ALA 347
H	LEU 892	PHE 898
I	LEU 892	PHE 898
J	LEU 892	PHE 898
K	LEU 892	PHE 898
L	LEU 892	PHE 898
M	LEU 892	PHE 898
1	A 1	C 16
2	G -16	T -1

There are125 helices in PDB entry 9GMZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	14	Right-handed 310
Helix 2	AA2	A	15	26	Right-handed alpha
Helix 3	AA3	A	30	46	Right-handed alpha
Helix 4	AA4	A	62	85	Right-handed alpha
Helix 5	AA5	A	105	117	Right-handed alpha
Helix 6	AA6	A	121	125	Right-handed 310
Helix 7	AA7	A	148	164	Right-handed alpha
Helix 8	AA8	A	172	178	Right-handed 310
Helix 9	AA9	A	184	200	Right-handed alpha
Helix 10	AB1	A	210	216	Right-handed alpha
Helix 11	AB2	A	218	224	Right-handed alpha
Helix 12	AB3	A	237	255	Right-handed alpha
Helix 13	AB4	A	266	275	Right-handed alpha
Helix 14	AB5	A	277	296	Right-handed alpha
Helix 15	AB6	A	301	309	Right-handed alpha
Helix 16	AB7	A	311	330	Right-handed alpha
Helix 17	AB8	B	8	13	Right-handed 310
Helix 18	AB9	B	15	26	Right-handed alpha
Helix 19	AC1	B	30	46	Right-handed alpha
Helix 20	AC2	B	62	83	Right-handed alpha
Helix 21	AC3	B	105	117	Right-handed alpha
Helix 22	AC4	B	121	125	Right-handed 310
Helix 23	AC5	B	148	164	Right-handed alpha
Helix 24	AC6	B	172	178	Right-handed 310
Helix 25	AC7	B	183	200	Right-handed alpha
Helix 26	AC8	B	208	215	Right-handed 310
Helix 27	AC9	B	218	224	Right-handed alpha
Helix 28	AD1	B	237	255	Right-handed alpha
Helix 29	AD2	B	266	273	Right-handed alpha
Helix 30	AD3	B	277	296	Right-handed alpha
Helix 31	AD4	B	301	308	Right-handed alpha
Helix 32	AD5	B	311	329	Right-handed alpha
Helix 33	AD6	B	332	344	Right-handed alpha
Helix 34	AD7	C	8	14	Right-handed 310
Helix 35	AD8	C	15	26	Right-handed alpha
Helix 36	AD9	C	30	46	Right-handed alpha
Helix 37	AE1	C	62	79	Right-handed alpha
Helix 38	AE2	C	80	84	Right-handed 310
Helix 39	AE3	C	105	117	Right-handed alpha
Helix 40	AE4	C	121	126	Right-handed alpha
Helix 41	AE5	C	148	164	Right-handed alpha
Helix 42	AE6	C	172	178	Right-handed 310
Helix 43	AE7	C	183	200	Right-handed alpha
Helix 44	AE8	C	208	215	Right-handed 310
Helix 45	AE9	C	218	224	Right-handed alpha
Helix 46	AF1	C	237	255	Right-handed alpha
Helix 47	AF2	C	263	265	Right-handed 310
Helix 48	AF3	C	266	273	Right-handed alpha
Helix 49	AF4	C	277	295	Right-handed alpha
Helix 50	AF5	C	301	308	Right-handed alpha
Helix 51	AF6	C	311	329	Right-handed alpha
Helix 52	AF7	C	332	343	Right-handed alpha
Helix 53	AF8	D	8	13	Right-handed 310
Helix 54	AF9	D	15	26	Right-handed alpha
Helix 55	AG1	D	30	46	Right-handed alpha
Helix 56	AG2	D	62	83	Right-handed alpha
Helix 57	AG3	D	105	116	Right-handed alpha
Helix 58	AG4	D	121	126	Right-handed alpha
Helix 59	AG5	D	148	164	Right-handed alpha
Helix 60	AG6	D	172	178	Right-handed 310
Helix 61	AG7	D	183	200	Right-handed alpha
Helix 62	AG8	D	208	215	Right-handed 310
Helix 63	AG9	D	218	224	Right-handed alpha
Helix 64	AH1	D	237	255	Right-handed alpha
Helix 65	AH2	D	263	265	Right-handed 310
Helix 66	AH3	D	266	273	Right-handed alpha
Helix 67	AH4	D	277	295	Right-handed alpha
Helix 68	AH5	D	301	308	Right-handed alpha
Helix 69	AH6	D	311	330	Right-handed alpha
Helix 70	AH7	D	332	343	Right-handed alpha
Helix 71	AH8	E	8	14	Right-handed 310
Helix 72	AH9	E	15	26	Right-handed alpha
Helix 73	AI1	E	30	46	Right-handed alpha
Helix 74	AI2	E	62	79	Right-handed alpha
Helix 75	AI3	E	80	82	Right-handed 310
Helix 76	AI4	E	105	117	Right-handed alpha
Helix 77	AI5	E	121	125	Right-handed 310
Helix 78	AI6	E	148	164	Right-handed alpha
Helix 79	AI7	E	172	178	Right-handed 310
Helix 80	AI8	E	183	200	Right-handed alpha
Helix 81	AI9	E	208	215	Right-handed 310
Helix 82	AJ1	E	218	224	Right-handed alpha
Helix 83	AJ2	E	237	254	Right-handed alpha
Helix 84	AJ3	E	263	265	Right-handed 310
Helix 85	AJ4	E	266	275	Right-handed alpha
Helix 86	AJ5	E	277	295	Right-handed alpha
Helix 87	AJ6	E	301	308	Right-handed alpha
Helix 88	AJ7	E	311	329	Right-handed alpha
Helix 89	AJ8	E	332	344	Right-handed alpha
Helix 90	AJ9	F	8	13	Right-handed 310
Helix 91	AK1	F	15	26	Right-handed alpha
Helix 92	AK2	F	30	46	Right-handed alpha
Helix 93	AK3	F	62	79	Right-handed alpha
Helix 94	AK4	F	80	85	Right-handed 310
Helix 95	AK5	F	105	117	Right-handed alpha
Helix 96	AK6	F	121	125	Right-handed 310
Helix 97	AK7	F	148	164	Right-handed alpha
Helix 98	AK8	F	172	178	Right-handed 310
Helix 99	AK9	F	183	200	Right-handed alpha
Helix 100	AL1	F	208	215	Right-handed 310
Helix 101	AL2	F	218	224	Right-handed alpha
Helix 102	AL3	F	237	253	Right-handed alpha
Helix 103	AL4	F	266	275	Right-handed alpha
Helix 104	AL5	F	277	296	Right-handed alpha
Helix 105	AL6	F	301	308	Right-handed alpha
Helix 106	AL7	F	311	328	Right-handed alpha
Helix 107	AL8	F	332	343	Right-handed alpha
Helix 108	AL9	G	8	14	Right-handed 310
Helix 109	AM1	G	15	26	Right-handed alpha
Helix 110	AM2	G	30	46	Right-handed alpha
Helix 111	AM3	G	62	83	Right-handed alpha
Helix 112	AM4	G	105	116	Right-handed alpha
Helix 113	AM5	G	121	125	Right-handed 310
Helix 114	AM6	G	148	164	Right-handed alpha
Helix 115	AM7	G	172	178	Right-handed 310
Helix 116	AM8	G	184	200	Right-handed alpha
Helix 117	AM9	G	208	215	Right-handed 310
Helix 118	AN1	G	218	224	Right-handed alpha
Helix 119	AN2	G	237	255	Right-handed alpha
Helix 120	AN3	G	262	265	Right-handed 310
Helix 121	AN4	G	266	275	Right-handed alpha
Helix 122	AN5	G	277	296	Right-handed alpha
Helix 123	AN6	G	301	308	Right-handed alpha
Helix 124	AN7	G	311	330	Right-handed alpha
Helix 125	AN8	G	332	344	Right-handed alpha

There are 10 sheets in PDB entry 9GMZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	95	first strand
Strand 2	A	167	171	parallel
Strand 3	A	202	207	parallel
Strand 4	A	52	57	parallel
Strand 5	A	225	230	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	95	first strand
Strand 2	B	167	171	parallel
Strand 3	B	203	207	parallel
Strand 4	B	52	57	parallel
Strand 5	B	225	230	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	95	first strand
Strand 2	C	167	171	parallel
Strand 3	C	203	207	parallel
Strand 4	C	52	57	parallel
Strand 5	C	225	230	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	135	first strand
Strand 2	C	141	143	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	95	first strand
Strand 2	D	167	171	parallel
Strand 3	D	203	207	parallel
Strand 4	D	52	57	parallel
Strand 5	D	225	230	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	135	first strand
Strand 2	D	141	142	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	95	first strand
Strand 2	E	167	171	parallel
Strand 3	E	202	207	parallel
Strand 4	E	52	57	parallel
Strand 5	E	225	230	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	133	135	first strand
Strand 2	E	141	143	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	91	95	first strand
Strand 2	F	167	171	parallel
Strand 3	F	203	207	parallel
Strand 4	F	52	57	parallel
Strand 5	F	225	230	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	91	95	first strand
Strand 2	G	167	171	parallel
Strand 3	G	203	207	parallel
Strand 4	G	52	56	parallel
Strand 5	G	225	229	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GMZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GMZ