Analysis of interatomic Contacts of Structural Units in PDB entry:
9GN3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GN3 entry

There are 3 chains in PDB entry 9GN3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 130	LEU 428
B	GLY 130	ALA 427
C	GLY 130	ALA 427

There are 31 helices in PDB entry 9GN3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	158	162	Right-handed 310
Helix 2	AA2	A	209	221	Right-handed alpha
Helix 3	AA3	A	222	236	Right-handed alpha
Helix 4	AA4	A	247	258	Right-handed alpha
Helix 5	AA5	A	305	315	Right-handed alpha
Helix 6	AA6	A	320	340	Right-handed alpha
Helix 7	AA7	A	342	350	Right-handed alpha
Helix 8	AA8	A	350	359	Right-handed alpha
Helix 9	AA9	A	365	382	Right-handed alpha
Helix 10	AB1	A	410	422	Right-handed alpha
Helix 11	AB2	B	158	162	Right-handed 310
Helix 12	AB3	B	209	220	Right-handed alpha
Helix 13	AB4	B	222	236	Right-handed alpha
Helix 14	AB5	B	247	258	Right-handed alpha
Helix 15	AB6	B	284	287	Right-handed 310
Helix 16	AB7	B	305	315	Right-handed alpha
Helix 17	AB8	B	320	340	Right-handed alpha
Helix 18	AB9	B	344	349	Right-handed alpha
Helix 19	AC1	B	350	359	Right-handed alpha
Helix 20	AC2	B	365	380	Right-handed alpha
Helix 21	AC3	B	410	421	Right-handed alpha
Helix 22	AC4	C	209	221	Right-handed alpha
Helix 23	AC5	C	222	236	Right-handed alpha
Helix 24	AC6	C	247	258	Right-handed alpha
Helix 25	AC7	C	284	287	Right-handed 310
Helix 26	AC8	C	305	315	Right-handed alpha
Helix 27	AC9	C	320	340	Right-handed alpha
Helix 28	AD1	C	342	347	Right-handed alpha
Helix 29	AD2	C	350	359	Right-handed alpha
Helix 30	AD3	C	365	382	Right-handed alpha
Helix 31	AD4	C	410	421	Right-handed alpha

There are 21 sheets in PDB entry 9GN3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	362	first strand
Strand 2	A	241	246	anti-parallel
Strand 3	A	144	151	parallel
Strand 4	A	164	172	anti-parallel
Strand 5	A	180	184	anti-parallel
Strand 6	A	385	389	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	190	first strand
Strand 2	A	207	208	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	199	first strand
Strand 2	A	202	203	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	266	first strand
Strand 2	A	300	304	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	271	first strand
Strand 2	A	274	275	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	282	first strand
Strand 2	A	294	298	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	396	399	first strand
Strand 2	A	405	408	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	360	362	first strand
Strand 2	B	241	246	anti-parallel
Strand 3	B	144	151	parallel
Strand 4	B	164	172	anti-parallel
Strand 5	B	180	184	anti-parallel
Strand 6	B	385	389	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	190	first strand
Strand 2	B	207	208	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	199	first strand
Strand 2	B	202	203	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	266	first strand
Strand 2	B	300	304	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	271	first strand
Strand 2	B	274	275	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	282	first strand
Strand 2	B	294	298	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	396	399	first strand
Strand 2	B	405	408	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	361	362	first strand
Strand 2	C	241	246	anti-parallel
Strand 3	C	144	151	parallel
Strand 4	C	164	172	anti-parallel
Strand 5	C	180	184	anti-parallel
Strand 6	C	385	389	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	189	190	first strand
Strand 2	C	207	208	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	198	199	first strand
Strand 2	C	202	203	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	262	266	first strand
Strand 2	C	300	304	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	270	271	first strand
Strand 2	C	274	275	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	278	282	first strand
Strand 2	C	294	298	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	396	399	first strand
Strand 2	C	405	408	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GN3

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GN3