Analysis of interatomic Contacts of Structural Units in PDB entry:
9GN5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GN5 entry

There is 1 chain in PDB entry 9GN5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 7ALA 559
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 9GN5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 15Right-handed alpha
Helix 2
AA2
A
19 24Right-handed alpha
Helix 3
AA3
A
30 52Right-handed alpha
Helix 4
AA4
A
53 61Right-handed alpha
Helix 5
AA5
A
66 74Right-handed alpha
Helix 6
AA6
A
82 86Right-handed 310
Helix 7
AA7
A
91 104Right-handed alpha
Helix 8
AA8
A
106 119Right-handed alpha
Helix 9
AA9
A
120 125Right-handed alpha
Helix 10
AB1
A
126 128Right-handed 310
Helix 11
AB2
A
131 144Right-handed alpha
Helix 12
AB3
A
187 190Right-handed 310
Helix 13
AB4
A
248 250Right-handed 310
Helix 14
AB5
A
266 277Right-handed alpha
Helix 15
AB6
A
277 299Right-handed alpha
Helix 16
AB7
A
309 336Right-handed alpha
Helix 17
AB8
A
347 377Right-handed alpha
Helix 18
AB9
A
378 385Right-handed alpha
Helix 19
AC1
A
392 401Right-handed alpha
Helix 20
AC2
A
402 405Right-handed 310
Helix 21
AC3
A
409 422Right-handed alpha
Helix 22
AC4
A
423 426Right-handed 310
Helix 23
AC5
A
432 438Right-handed alpha
Helix 24
AC6
A
443 447Right-handed 310
Helix 25
AC7
A
452 480Right-handed alpha
Helix 26
AC8
A
482 487Right-handed alpha
Helix 27
AC9
A
489 519Right-handed alpha
Helix 28
AD1
A
522 547Right-handed alpha
Helix 29
AD2
A
553 559Right-handed alpha
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There are 3 sheets in PDB entry 9GN5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 150first strand
Strand 2
A
192 201parallel
Strand 3
A
204 213anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 168first strand
Strand 2
A
174 185anti-parallel
Strand 3
A
235 246anti-parallel
Strand 4
A
219 224anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 301first strand
Strand 2
A
304 305anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il