Analysis of interatomic Contacts of Structural Units in PDB entry:
9GN7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GN7 entry

There is 1 chain in PDB entry 9GN7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2GLN 371
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 9GN7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 16Right-handed 310
Helix 2
AA2
A
43 56Right-handed alpha
Helix 3
AA3
A
58 62Right-handed 310
Helix 4
AA4
A
71 77Right-handed alpha
Helix 5
AA5
A
80 93Right-handed alpha
Helix 6
AA6
A
107 128Right-handed alpha
Helix 7
AA7
A
157 170Right-handed alpha
Helix 8
AA8
A
185 192Right-handed alpha
Helix 9
AA9
A
221 225Right-handed 310
Helix 10
AB1
A
238 249Right-handed alpha
Helix 11
AB2
A
249 258Right-handed alpha
Helix 12
AB3
A
282 302Right-handed alpha
Helix 13
AB4
A
317 331Right-handed alpha
Helix 14
AB5
A
340 347Right-handed alpha
Helix 15
AB6
A
350 368Right-handed alpha
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There are 3 sheets in PDB entry 9GN7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 65first strand
Strand 2
A
5 8parallel
Strand 3
A
133 136parallel
Strand 4
A
305 309parallel
Strand 5
A
262 266parallel
Strand 6
A
175 179parallel
Strand 7
A
198 205parallel
Strand 8
A
228 233parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 22first strand
Strand 2
A
25 26anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 97first strand
Strand 2
A
103 104anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il