Analysis of interatomic Contacts of Structural Units in PDB entry:
9GNH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GNH entry

There are 3 chains in PDB entry 9GNH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 3	PHE 1299
B	ALA 3	PHE 1299
C	ALA 3	PHE 1299

There are144 helices in PDB entry 9GNH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	13	Right-handed alpha
Helix 2	AA2	A	27	38	Right-handed alpha
Helix 3	AA3	A	38	61	Right-handed alpha
Helix 4	AA4	A	63	93	Right-handed alpha
Helix 5	AA5	A	95	103	Right-handed alpha
Helix 6	AA6	A	104	109	Right-handed alpha
Helix 7	AA7	A	111	133	Right-handed alpha
Helix 8	AA8	A	152	157	Right-handed alpha
Helix 9	AA9	A	161	165	Right-handed 310
Helix 10	AB1	A	182	201	Right-handed alpha
Helix 11	AB2	A	219	224	Right-handed alpha
Helix 12	AB3	A	252	262	Right-handed alpha
Helix 13	AB4	A	263	266	Right-handed 310
Helix 14	AB5	A	301	316	Right-handed alpha
Helix 15	AB6	A	335	340	Right-handed 310
Helix 16	AB7	A	383	388	Right-handed alpha
Helix 17	AB8	A	395	402	Right-handed alpha
Helix 18	AB9	A	474	478	Right-handed alpha
Helix 19	AC1	A	485	502	Right-handed alpha
Helix 20	AC2	A	514	524	Right-handed alpha
Helix 21	AC3	A	528	541	Right-handed alpha
Helix 22	AC4	A	551	553	Right-handed 310
Helix 23	AC5	A	554	563	Right-handed alpha
Helix 24	AC6	A	564	600	Right-handed alpha
Helix 25	AC7	A	600	608	Right-handed alpha
Helix 26	AC8	A	610	614	Right-handed 310
Helix 27	AC9	A	631	646	Right-handed alpha
Helix 28	AD1	A	666	693	Right-handed alpha
Helix 29	AD2	A	715	733	Right-handed alpha
Helix 30	AD3	A	733	748	Right-handed alpha
Helix 31	AD4	A	748	753	Right-handed alpha
Helix 32	AD5	A	780	797	Right-handed alpha
Helix 33	AD6	A	820	831	Right-handed alpha
Helix 34	AD7	A	839	855	Right-handed alpha
Helix 35	AD8	A	860	871	Right-handed alpha
Helix 36	AD9	A	1015	1019	Right-handed 310
Helix 37	AE1	A	1023	1032	Right-handed alpha
Helix 38	AE2	A	1074	1078	Right-handed 310
Helix 39	AE3	A	1086	1095	Right-handed alpha
Helix 40	AE4	A	1099	1112	Right-handed alpha
Helix 41	AE5	A	1126	1142	Right-handed alpha
Helix 42	AE6	A	1198	1202	Right-handed 310
Helix 43	AE7	A	1220	1225	Right-handed alpha
Helix 44	AE8	A	1228	1233	Right-handed 310
Helix 45	AE9	A	1235	1242	Right-handed 310
Helix 46	AF1	A	1246	1259	Right-handed alpha
Helix 47	AF2	A	1260	1274	Right-handed alpha
Helix 48	AF3	A	1284	1289	Right-handed alpha
Helix 49	AF4	B	6	13	Right-handed alpha
Helix 50	AF5	B	27	38	Right-handed alpha
Helix 51	AF6	B	38	61	Right-handed alpha
Helix 52	AF7	B	63	93	Right-handed alpha
Helix 53	AF8	B	95	103	Right-handed alpha
Helix 54	AF9	B	104	109	Right-handed alpha
Helix 55	AG1	B	111	133	Right-handed alpha
Helix 56	AG2	B	152	157	Right-handed alpha
Helix 57	AG3	B	161	165	Right-handed 310
Helix 58	AG4	B	182	201	Right-handed alpha
Helix 59	AG5	B	219	224	Right-handed alpha
Helix 60	AG6	B	252	262	Right-handed alpha
Helix 61	AG7	B	263	266	Right-handed 310
Helix 62	AG8	B	301	316	Right-handed alpha
Helix 63	AG9	B	335	340	Right-handed 310
Helix 64	AH1	B	383	388	Right-handed alpha
Helix 65	AH2	B	395	402	Right-handed alpha
Helix 66	AH3	B	474	478	Right-handed alpha
Helix 67	AH4	B	485	502	Right-handed alpha
Helix 68	AH5	B	514	524	Right-handed alpha
Helix 69	AH6	B	528	541	Right-handed alpha
Helix 70	AH7	B	551	553	Right-handed 310
Helix 71	AH8	B	554	563	Right-handed alpha
Helix 72	AH9	B	564	600	Right-handed alpha
Helix 73	AI1	B	600	608	Right-handed alpha
Helix 74	AI2	B	610	614	Right-handed 310
Helix 75	AI3	B	631	646	Right-handed alpha
Helix 76	AI4	B	666	693	Right-handed alpha
Helix 77	AI5	B	715	733	Right-handed alpha
Helix 78	AI6	B	733	748	Right-handed alpha
Helix 79	AI7	B	748	753	Right-handed alpha
Helix 80	AI8	B	780	797	Right-handed alpha
Helix 81	AI9	B	820	831	Right-handed alpha
Helix 82	AJ1	B	839	855	Right-handed alpha
Helix 83	AJ2	B	860	871	Right-handed alpha
Helix 84	AJ3	B	1015	1019	Right-handed 310
Helix 85	AJ4	B	1023	1032	Right-handed alpha
Helix 86	AJ5	B	1074	1078	Right-handed 310
Helix 87	AJ6	B	1086	1095	Right-handed alpha
Helix 88	AJ7	B	1099	1112	Right-handed alpha
Helix 89	AJ8	B	1126	1142	Right-handed alpha
Helix 90	AJ9	B	1198	1202	Right-handed 310
Helix 91	AK1	B	1220	1225	Right-handed alpha
Helix 92	AK2	B	1228	1233	Right-handed 310
Helix 93	AK3	B	1235	1242	Right-handed 310
Helix 94	AK4	B	1246	1259	Right-handed alpha
Helix 95	AK5	B	1260	1274	Right-handed alpha
Helix 96	AK6	B	1284	1289	Right-handed alpha
Helix 97	AK7	C	6	13	Right-handed alpha
Helix 98	AK8	C	27	38	Right-handed alpha
Helix 99	AK9	C	38	61	Right-handed alpha
Helix 100	AL1	C	63	93	Right-handed alpha
Helix 101	AL2	C	95	103	Right-handed alpha
Helix 102	AL3	C	104	109	Right-handed alpha
Helix 103	AL4	C	111	133	Right-handed alpha
Helix 104	AL5	C	152	157	Right-handed alpha
Helix 105	AL6	C	161	165	Right-handed 310
Helix 106	AL7	C	182	201	Right-handed alpha
Helix 107	AL8	C	219	224	Right-handed alpha
Helix 108	AL9	C	252	262	Right-handed alpha
Helix 109	AM1	C	263	266	Right-handed 310
Helix 110	AM2	C	301	316	Right-handed alpha
Helix 111	AM3	C	335	340	Right-handed 310
Helix 112	AM4	C	383	388	Right-handed alpha
Helix 113	AM5	C	395	402	Right-handed alpha
Helix 114	AM6	C	474	478	Right-handed alpha
Helix 115	AM7	C	485	502	Right-handed alpha
Helix 116	AM8	C	514	524	Right-handed alpha
Helix 117	AM9	C	528	541	Right-handed alpha
Helix 118	AN1	C	551	553	Right-handed 310
Helix 119	AN2	C	554	563	Right-handed alpha
Helix 120	AN3	C	564	600	Right-handed alpha
Helix 121	AN4	C	600	608	Right-handed alpha
Helix 122	AN5	C	610	614	Right-handed 310
Helix 123	AN6	C	631	646	Right-handed alpha
Helix 124	AN7	C	666	693	Right-handed alpha
Helix 125	AN8	C	715	733	Right-handed alpha
Helix 126	AN9	C	733	748	Right-handed alpha
Helix 127	AO1	C	748	753	Right-handed alpha
Helix 128	AO2	C	780	797	Right-handed alpha
Helix 129	AO3	C	820	831	Right-handed alpha
Helix 130	AO4	C	839	855	Right-handed alpha
Helix 131	AO5	C	860	871	Right-handed alpha
Helix 132	AO6	C	1015	1019	Right-handed 310
Helix 133	AO7	C	1023	1032	Right-handed alpha
Helix 134	AO8	C	1074	1078	Right-handed 310
Helix 135	AO9	C	1086	1095	Right-handed alpha
Helix 136	AP1	C	1099	1112	Right-handed alpha
Helix 137	AP2	C	1126	1142	Right-handed alpha
Helix 138	AP3	C	1198	1202	Right-handed 310
Helix 139	AP4	C	1220	1225	Right-handed alpha
Helix 140	AP5	C	1228	1233	Right-handed 310
Helix 141	AP6	C	1235	1242	Right-handed 310
Helix 142	AP7	C	1246	1259	Right-handed alpha
Helix 143	AP8	C	1260	1274	Right-handed alpha
Helix 144	AP9	C	1284	1289	Right-handed alpha

There are 21 sheets in PDB entry 9GNH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	142	first strand
Strand 2	A	146	147	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	291	first strand
Strand 2	A	204	211	anti-parallel
Strand 3	A	466	472	anti-parallel
Strand 4	A	458	463	anti-parallel
Strand 5	A	445	449	anti-parallel
Strand 6	A	323	326	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	269	first strand
Strand 2	A	274	275	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	479	480	first strand
Strand 2	A	483	484	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1010	1014	first strand
Strand 2	A	877	885	anti-parallel
Strand 3	A	1210	1219	anti-parallel
Strand 4	A	1186	1189	anti-parallel
Strand 5	A	1193	1195	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1010	1014	first strand
Strand 2	A	877	885	anti-parallel
Strand 3	A	1210	1219	anti-parallel
Strand 4	A	1205	1207	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1280	1282	first strand
Strand 2	A	1296	1298	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	142	first strand
Strand 2	B	146	147	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	287	291	first strand
Strand 2	B	204	211	anti-parallel
Strand 3	B	466	472	anti-parallel
Strand 4	B	458	463	anti-parallel
Strand 5	B	445	449	anti-parallel
Strand 6	B	323	326	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	268	269	first strand
Strand 2	B	274	275	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	479	480	first strand
Strand 2	B	483	484	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1010	1014	first strand
Strand 2	B	877	885	anti-parallel
Strand 3	B	1210	1219	anti-parallel
Strand 4	B	1186	1189	anti-parallel
Strand 5	B	1193	1195	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1010	1014	first strand
Strand 2	B	877	885	anti-parallel
Strand 3	B	1210	1219	anti-parallel
Strand 4	B	1205	1207	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1280	1282	first strand
Strand 2	B	1296	1298	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	142	first strand
Strand 2	C	146	147	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	287	291	first strand
Strand 2	C	204	211	anti-parallel
Strand 3	C	466	472	anti-parallel
Strand 4	C	458	463	anti-parallel
Strand 5	C	445	449	anti-parallel
Strand 6	C	323	326	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	268	269	first strand
Strand 2	C	274	275	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	479	480	first strand
Strand 2	C	483	484	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1010	1014	first strand
Strand 2	C	877	885	anti-parallel
Strand 3	C	1210	1219	anti-parallel
Strand 4	C	1186	1189	anti-parallel
Strand 5	C	1193	1195	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1010	1014	first strand
Strand 2	C	877	885	anti-parallel
Strand 3	C	1210	1219	anti-parallel
Strand 4	C	1205	1207	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1280	1282	first strand
Strand 2	C	1296	1298	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GNH

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GNH