Analysis of interatomic Contacts of Structural Units in PDB entry:
9GNL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GNL entry

There are 2 chains in PDB entry 9GNL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 34GLN 219
B
 THR 29GLN 219
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 9GNL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 50Right-handed alpha
Helix 2
AA2
A
50 58Right-handed alpha
Helix 3
AA3
A
78 87Right-handed alpha
Helix 4
AA4
A
91 95Right-handed 310
Helix 5
AA5
A
189 218Right-handed alpha
Helix 6
AA6
B
43 50Right-handed alpha
Helix 7
AA7
B
50 58Right-handed alpha
Helix 8
AA8
B
78 87Right-handed alpha
Helix 9
AA9
B
91 95Right-handed 310
Helix 10
AB1
B
189 218Right-handed alpha
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There are 2 sheets in PDB entry 9GNL. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 75first strand
Strand 2
A
172 182anti-parallel
Strand 3
A
158 167anti-parallel
Strand 4
A
142 149anti-parallel
Strand 5
A
128 137anti-parallel
Strand 6
A
115 120anti-parallel
Strand 7
A
99 103anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 75first strand
Strand 2
B
173 183anti-parallel
Strand 3
B
155 166anti-parallel
Strand 4
B
142 149anti-parallel
Strand 5
B
128 137anti-parallel
Strand 6
B
115 120anti-parallel
Strand 7
B
99 104anti-parallel
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