Analysis of interatomic Contacts of Structural Units in PDB entry:
9GNM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GNM entry

There are 2 chains in PDB entry 9GNM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 28GLN 219
B
 THR 28ARG 217
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 9GNM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 37Right-handed 310
Helix 2
AA2
A
43 58Right-handed alpha
Helix 3
AA3
A
78 87Right-handed alpha
Helix 4
AA4
A
91 95Right-handed 310
Helix 5
AA5
A
189 218Right-handed alpha
Helix 6
AA6
B
33 37Right-handed 310
Helix 7
AA7
B
43 58Right-handed alpha
Helix 8
AA8
B
78 87Right-handed alpha
Helix 9
AA9
B
91 95Right-handed 310
Helix 10
AB1
B
189 217Right-handed alpha
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There are 4 sheets in PDB entry 9GNM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 31first strand
Strand 2
A
61 62anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 75first strand
Strand 2
A
171 183anti-parallel
Strand 3
A
158 168anti-parallel
Strand 4
A
142 149anti-parallel
Strand 5
A
128 137anti-parallel
Strand 6
A
115 120anti-parallel
Strand 7
A
99 103anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 31first strand
Strand 2
B
61 62anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 75first strand
Strand 2
B
171 183anti-parallel
Strand 3
B
158 168anti-parallel
Strand 4
B
142 149anti-parallel
Strand 5
B
129 137anti-parallel
Strand 6
B
115 120anti-parallel
Strand 7
B
99 104anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il