Analysis of interatomic Contacts of Structural Units in PDB entry:
9GNW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GNW entry

There are 21 chains in PDB entry 9GNW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 9	ALA 344
B	GLY 2	LEU 217
B	VAL 219	ASP 485
V	MET 1	LEU 33
C	GLY 13	ASP 461
D	ILE 5	LEU 352
E	GLU 7	GLN 82
F	ILE 14	ARG 44
H	GLU 19	ALA 85
I	MET 1	GLY 33
J	THR 7	LEU 42
K	LYS 10	ARG 46
L	ARG 3	ASN 38
M	VAL 3	GLU 33
O	LEU 62	THR 299
P	ALA 58	VAL 244
T	MET 1	ALA 30
W	LEU 60	GLY 104
X	SER 64	PHE 96
Z	MET 1	ALA 61
U	ARG 100	ASN 127

There are113 helices in PDB entry 9GNW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	22	Right-handed alpha
Helix 2	AA2	A	33	54	Right-handed alpha
Helix 3	AA3	A	95	99	Right-handed 310
Helix 4	AA4	A	101	108	Right-handed alpha
Helix 5	AA5	A	109	137	Right-handed alpha
Helix 6	AA6	A	142	159	Right-handed alpha
Helix 7	AA7	A	159	166	Right-handed alpha
Helix 8	AA8	A	167	171	Right-handed 310
Helix 9	AA9	A	176	191	Right-handed alpha
Helix 10	AB1	A	192	194	Right-handed 310
Helix 11	AB2	A	195	223	Right-handed alpha
Helix 12	AB3	A	232	237	Right-handed 310
Helix 13	AB4	A	247	259	Right-handed alpha
Helix 14	AB5	A	267	295	Right-handed alpha
Helix 15	AB6	A	316	330	Right-handed alpha
Helix 16	AB7	B	7	13	Right-handed 310
Helix 17	AB8	B	15	44	Right-handed alpha
Helix 18	AB9	B	54	58	Right-handed 310
Helix 19	AC1	B	62	70	Right-handed alpha
Helix 20	AC2	B	92	117	Right-handed alpha
Helix 21	AC3	B	120	124	Right-handed 310
Helix 22	AC4	B	134	156	Right-handed alpha
Helix 23	AC5	B	186	191	Right-handed 310
Helix 24	AC6	B	196	217	Right-handed alpha
Helix 25	AC7	B	222	229	Right-handed alpha
Helix 26	AC8	B	233	258	Right-handed alpha
Helix 27	AC9	B	264	269	Right-handed alpha
Helix 28	AD1	B	271	277	Right-handed alpha
Helix 29	AD2	B	278	294	Right-handed alpha
Helix 30	AD3	B	297	304	Right-handed alpha
Helix 31	AD4	B	306	313	Right-handed alpha
Helix 32	AD5	B	314	318	Right-handed 310
Helix 33	AD6	B	329	334	Right-handed alpha
Helix 34	AD7	B	391	396	Right-handed alpha
Helix 35	AD8	B	413	425	Right-handed alpha
Helix 36	AD9	B	446	475	Right-handed alpha
Helix 37	AE1	B	477	481	Right-handed 310
Helix 38	AE2	V	2	30	Right-handed alpha
Helix 39	AE3	C	15	20	Right-handed alpha
Helix 40	AE4	C	22	31	Right-handed 310
Helix 41	AE5	C	33	62	Right-handed alpha
Helix 42	AE6	C	68	73	Right-handed 310
Helix 43	AE7	C	75	83	Right-handed alpha
Helix 44	AE8	C	96	123	Right-handed alpha
Helix 45	AE9	C	132	136	Right-handed 310
Helix 46	AF1	C	141	170	Right-handed alpha
Helix 47	AF2	C	193	200	Right-handed alpha
Helix 48	AF3	C	210	215	Right-handed 310
Helix 49	AF4	C	217	242	Right-handed alpha
Helix 50	AF5	C	245	252	Right-handed alpha
Helix 51	AF6	C	255	281	Right-handed alpha
Helix 52	AF7	C	286	291	Right-handed alpha
Helix 53	AF8	C	293	312	Right-handed alpha
Helix 54	AF9	C	341	347	Right-handed 310
Helix 55	AG1	C	354	356	Right-handed 310
Helix 56	AG2	C	366	371	Right-handed alpha
Helix 57	AG3	C	373	386	Right-handed alpha
Helix 58	AG4	C	409	442	Right-handed alpha
Helix 59	AG5	C	453	457	Right-handed 310
Helix 60	AG6	D	13	23	Right-handed alpha
Helix 61	AG7	D	30	54	Right-handed alpha
Helix 62	AG8	D	66	70	Right-handed 310
Helix 63	AG9	D	82	86	Right-handed 310
Helix 64	AH1	D	100	108	Right-handed alpha
Helix 65	AH2	D	108	137	Right-handed alpha
Helix 66	AH3	D	140	158	Right-handed alpha
Helix 67	AH4	D	158	164	Right-handed alpha
Helix 68	AH5	D	166	170	Right-handed 310
Helix 69	AH6	D	175	190	Right-handed alpha
Helix 70	AH7	D	191	193	Right-handed 310
Helix 71	AH8	D	194	221	Right-handed alpha
Helix 72	AH9	D	245	257	Right-handed alpha
Helix 73	AI1	D	263	291	Right-handed alpha
Helix 74	AI2	D	298	308	Right-handed alpha
Helix 75	AI3	D	313	334	Right-handed alpha
Helix 76	AI4	D	335	338	Right-handed 310
Helix 77	AI5	E	9	15	Right-handed alpha
Helix 78	AI6	E	16	24	Right-handed alpha
Helix 79	AI7	E	26	40	Right-handed alpha
Helix 80	AI8	E	41	48	Right-handed alpha
Helix 81	AI9	E	71	80	Right-handed alpha
Helix 82	AJ1	F	16	25	Right-handed alpha
Helix 83	AJ2	F	26	40	Right-handed alpha
Helix 84	AJ3	H	24	36	Right-handed alpha
Helix 85	AJ4	H	46	69	Right-handed alpha
Helix 86	AJ5	H	80	85	Right-handed 310
Helix 87	AJ6	I	2	25	Right-handed alpha
Helix 88	AJ7	I	26	30	Right-handed 310
Helix 89	AJ8	J	11	36	Right-handed alpha
Helix 90	AJ9	K	12	17	Right-handed 310
Helix 91	AK1	K	18	25	Right-handed alpha
Helix 92	AK2	K	27	43	Right-handed alpha
Helix 93	AK3	L	14	38	Right-handed alpha
Helix 94	AK4	M	5	33	Right-handed alpha
Helix 95	AK5	O	63	70	Right-handed alpha
Helix 96	AK6	O	71	76	Right-handed alpha
Helix 97	AK7	O	93	97	Right-handed 310
Helix 98	AK8	O	233	237	Right-handed 310
Helix 99	AK9	P	127	132	Right-handed 310
Helix 100	AL1	P	133	141	Right-handed alpha
Helix 101	AL2	P	142	146	Right-handed 310
Helix 102	AL3	P	196	199	Right-handed 310
Helix 103	AL4	P	223	228	Right-handed alpha
Helix 104	AL5	P	229	241	Right-handed alpha
Helix 105	AL6	T	2	23	Right-handed alpha
Helix 106	AL7	W	72	76	Right-handed 310
Helix 107	AL8	W	78	100	Right-handed alpha
Helix 108	AL9	X	66	96	Right-handed alpha
Helix 109	AM1	Z	2	29	Right-handed alpha
Helix 110	AM2	Z	31	36	Right-handed alpha
Helix 111	AM3	Z	36	61	Right-handed alpha
Helix 112	AM4	U	102	114	Right-handed alpha
Helix 113	AM5	U	117	122	Right-handed alpha

There are 13 sheets in PDB entry 9GNW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	82	first strand
Strand 2	A	174	175	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	168	first strand
Strand 2	B	177	179	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	322	323	first strand
Strand 2	D	293	294	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	377	380	first strand
Strand 2	B	369	371	anti-parallel
Strand 3	B	353	356	anti-parallel
Strand 4	B	336	347	anti-parallel
Strand 5	B	398	402	anti-parallel
Strand 6	B	409	411	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	377	380	first strand
Strand 2	B	369	371	anti-parallel
Strand 3	B	353	356	anti-parallel
Strand 4	B	336	347	anti-parallel
Strand 5	B	429	433	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	175	first strand
Strand 2	C	183	185	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	329	331	first strand
Strand 2	C	337	339	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	358	359	first strand
Strand 2	C	362	363	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	78	first strand
Strand 2	D	173	174	anti-parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	125	129	first strand
Strand 2	O	100	119	anti-parallel
Strand 3	O	287	297	anti-parallel
Strand 4	O	265	275	anti-parallel
Strand 5	O	248	260	anti-parallel
Strand 6	O	196	202	anti-parallel
Strand 7	O	188	191	anti-parallel
Strand 8	O	155	159	anti-parallel
Strand 9	O	140	149	anti-parallel
Strand 10	O	100	119	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	131	132	first strand
Strand 2	O	165	172	anti-parallel
Strand 3	O	176	183	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	75	79	first strand
Strand 2	P	83	88	anti-parallel
Strand 3	P	242	243	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	91	93	first strand
Strand 2	P	102	108	anti-parallel
Strand 3	P	115	122	anti-parallel
Strand 4	P	213	222	anti-parallel
Strand 5	P	201	210	anti-parallel
Strand 6	P	184	193	anti-parallel
Strand 7	P	166	176	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GNW

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GNW