Analysis of interatomic Contacts of Structural Units in PDB entry:
9GNX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GNX entry

There are 2 chains in PDB entry 9GNX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 568MET 754
B
 GLU 20GLY 96
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 9GNX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
570 575Right-handed alpha
Helix 2
AA2
A
576 578Right-handed 310
Helix 3
AA3
A
585 599Right-handed alpha
Helix 4
AA4
A
609 618Right-handed alpha
Helix 5
AA5
A
618 623Right-handed alpha
Helix 6
AA6
A
624 627Right-handed 310
Helix 7
AA7
A
630 634Right-handed 310
Helix 8
AA8
A
670 687Right-handed alpha
Helix 9
AA9
A
689 693Right-handed 310
Helix 10
AB1
A
712 726Right-handed alpha
Helix 11
AB2
A
733 735Right-handed 310
Helix 12
AB3
A
736 751Right-handed alpha
Helix 13
AB4
B
44 56Right-handed alpha
Helix 14
AB5
B
58 60Right-handed 310
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There are 3 sheets in PDB entry 9GNX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
583 584first strand
Strand 2
B
95 96anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
603 605first strand
Strand 2
A
636 643parallel
Strand 3
A
646 653anti-parallel
Strand 4
A
658 662anti-parallel
Strand 5
A
697 700parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 39first strand
Strand 2
B
21 27anti-parallel
Strand 3
B
86 92parallel
Strand 4
B
62 66anti-parallel
Strand 5
B
69 70anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il