Analysis of interatomic Contacts of Structural Units in PDB entry:
9GO3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GO3 entry

There are 7 chains in PDB entry 9GO3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 471	LEU 723
B	ALA 471	LEU 723
C	ALA 471	LEU 723
D	ALA 471	LEU 723
E	ALA 471	LEU 723
F	ALA 471	LEU 723
G	ALA 471	LEU 723

There are 49 helices in PDB entry 9GO3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	471	498	Right-handed alpha
Helix 2	AA2	A	506	532	Right-handed alpha
Helix 3	AA3	A	537	555	Right-handed alpha
Helix 4	AA4	A	555	571	Right-handed alpha
Helix 5	AA5	A	638	656	Right-handed alpha
Helix 6	AA6	A	656	663	Right-handed alpha
Helix 7	AA7	A	692	712	Right-handed alpha
Helix 8	AA8	B	472	498	Right-handed alpha
Helix 9	AA9	B	506	532	Right-handed alpha
Helix 10	AB1	B	537	555	Right-handed alpha
Helix 11	AB2	B	555	571	Right-handed alpha
Helix 12	AB3	B	638	656	Right-handed alpha
Helix 13	AB4	B	656	663	Right-handed alpha
Helix 14	AB5	B	692	712	Right-handed alpha
Helix 15	AB6	C	472	498	Right-handed alpha
Helix 16	AB7	C	506	532	Right-handed alpha
Helix 17	AB8	C	537	555	Right-handed alpha
Helix 18	AB9	C	555	571	Right-handed alpha
Helix 19	AC1	C	638	656	Right-handed alpha
Helix 20	AC2	C	656	663	Right-handed alpha
Helix 21	AC3	C	692	712	Right-handed alpha
Helix 22	AC4	D	472	498	Right-handed alpha
Helix 23	AC5	D	506	532	Right-handed alpha
Helix 24	AC6	D	537	555	Right-handed alpha
Helix 25	AC7	D	555	571	Right-handed alpha
Helix 26	AC8	D	638	656	Right-handed alpha
Helix 27	AC9	D	656	663	Right-handed alpha
Helix 28	AD1	D	692	712	Right-handed alpha
Helix 29	AD2	E	472	498	Right-handed alpha
Helix 30	AD3	E	506	532	Right-handed alpha
Helix 31	AD4	E	537	555	Right-handed alpha
Helix 32	AD5	E	555	571	Right-handed alpha
Helix 33	AD6	E	638	656	Right-handed alpha
Helix 34	AD7	E	656	663	Right-handed alpha
Helix 35	AD8	E	692	712	Right-handed alpha
Helix 36	AD9	F	472	498	Right-handed alpha
Helix 37	AE1	F	506	532	Right-handed alpha
Helix 38	AE2	F	537	555	Right-handed alpha
Helix 39	AE3	F	555	571	Right-handed alpha
Helix 40	AE4	F	638	656	Right-handed alpha
Helix 41	AE5	F	656	663	Right-handed alpha
Helix 42	AE6	F	692	712	Right-handed alpha
Helix 43	AE7	G	472	498	Right-handed alpha
Helix 44	AE8	G	506	532	Right-handed alpha
Helix 45	AE9	G	537	555	Right-handed alpha
Helix 46	AF1	G	555	571	Right-handed alpha
Helix 47	AF2	G	638	656	Right-handed alpha
Helix 48	AF3	G	656	663	Right-handed alpha
Helix 49	AF4	G	692	712	Right-handed alpha

There are 9 sheets in PDB entry 9GO3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 36 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	579	582	first strand
Strand 2	A	585	592	anti-parallel
Strand 3	A	596	600	anti-parallel
Strand 4	A	606	610	anti-parallel
Strand 5	G	617	619	anti-parallel
Strand 6	G	579	582	anti-parallel
Strand 7	G	585	592	anti-parallel
Strand 8	G	596	600	anti-parallel
Strand 9	G	606	610	anti-parallel
Strand 10	F	617	619	anti-parallel
Strand 11	F	579	582	anti-parallel
Strand 12	F	585	592	anti-parallel
Strand 13	F	596	600	anti-parallel
Strand 14	F	606	610	anti-parallel
Strand 15	E	617	619	anti-parallel
Strand 16	E	579	582	anti-parallel
Strand 17	E	585	592	anti-parallel
Strand 18	E	596	600	anti-parallel
Strand 19	E	606	610	anti-parallel
Strand 20	D	617	619	anti-parallel
Strand 21	D	579	582	anti-parallel
Strand 22	D	585	592	anti-parallel
Strand 23	D	596	600	anti-parallel
Strand 24	D	606	610	anti-parallel
Strand 25	C	617	619	anti-parallel
Strand 26	C	579	582	anti-parallel
Strand 27	C	585	592	anti-parallel
Strand 28	C	596	600	anti-parallel
Strand 29	C	606	610	anti-parallel
Strand 30	B	617	619	anti-parallel
Strand 31	B	579	582	anti-parallel
Strand 32	B	585	592	anti-parallel
Strand 33	B	596	600	anti-parallel
Strand 34	B	606	610	anti-parallel
Strand 35	A	617	619	anti-parallel
Strand 36	A	579	582	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	625	634	first strand
Strand 2	A	679	688	anti-parallel
Strand 3	A	668	675	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	718	722	first strand
Strand 2	B	718	722	parallel
Strand 3	C	718	722	parallel
Strand 4	D	718	722	parallel
Strand 5	E	718	722	parallel
Strand 6	F	718	722	parallel
Strand 7	G	718	722	parallel
Strand 8	A	718	722	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	625	634	first strand
Strand 2	B	679	688	anti-parallel
Strand 3	B	668	675	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	625	634	first strand
Strand 2	C	679	688	anti-parallel
Strand 3	C	668	675	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	625	634	first strand
Strand 2	D	679	688	anti-parallel
Strand 3	D	668	675	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	625	634	first strand
Strand 2	E	679	688	anti-parallel
Strand 3	E	668	675	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	625	634	first strand
Strand 2	F	679	688	anti-parallel
Strand 3	F	668	675	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	625	634	first strand
Strand 2	G	679	688	anti-parallel
Strand 3	G	668	675	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GO3

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GO3