Analysis of interatomic Contacts of Structural Units in PDB entry:
9GOA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GOA entry

There are 4 chains in PDB entry 9GOA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 116	GLY 1195
B	SER 116	GLY 1195
C	SER 116	GLY 1195
D	SER 116	GLY 1195

There are220 helices in PDB entry 9GOA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	116	182	Right-handed alpha
Helix 2	AA2	A	183	193	Right-handed alpha
Helix 3	AA3	A	196	204	Right-handed alpha
Helix 4	AA4	A	212	223	Right-handed alpha
Helix 5	AA5	A	234	269	Right-handed alpha
Helix 6	AA6	A	272	295	Right-handed alpha
Helix 7	AA7	A	305	319	Right-handed alpha
Helix 8	AA8	A	326	350	Right-handed alpha
Helix 9	AA9	A	456	463	Right-handed alpha
Helix 10	AB1	A	467	481	Right-handed alpha
Helix 11	AB2	A	493	502	Right-handed alpha
Helix 12	AB3	A	503	512	Right-handed alpha
Helix 13	AB4	A	515	520	Right-handed alpha
Helix 14	AB5	A	528	537	Right-handed alpha
Helix 15	AB6	A	538	549	Right-handed alpha
Helix 16	AB7	A	562	571	Right-handed alpha
Helix 17	AB8	A	572	581	Right-handed alpha
Helix 18	AB9	A	596	605	Right-handed alpha
Helix 19	AC1	A	605	615	Right-handed alpha
Helix 20	AC2	A	629	637	Right-handed alpha
Helix 21	AC3	A	639	650	Right-handed alpha
Helix 22	AC4	A	663	672	Right-handed alpha
Helix 23	AC5	A	673	684	Right-handed alpha
Helix 24	AC6	A	698	705	Right-handed alpha
Helix 25	AC7	A	708	718	Right-handed alpha
Helix 26	AC8	A	732	741	Right-handed alpha
Helix 27	AC9	A	743	753	Right-handed alpha
Helix 28	AD1	A	765	771	Right-handed alpha
Helix 29	AD2	A	776	786	Right-handed alpha
Helix 30	AD3	A	798	807	Right-handed alpha
Helix 31	AD4	A	808	818	Right-handed alpha
Helix 32	AD5	A	831	840	Right-handed alpha
Helix 33	AD6	A	841	852	Right-handed alpha
Helix 34	AD7	A	853	858	Right-handed alpha
Helix 35	AD8	A	865	874	Right-handed alpha
Helix 36	AD9	A	875	884	Right-handed alpha
Helix 37	AE1	A	898	907	Right-handed alpha
Helix 38	AE2	A	908	919	Right-handed alpha
Helix 39	AE3	A	931	939	Right-handed alpha
Helix 40	AE4	A	941	951	Right-handed alpha
Helix 41	AE5	A	961	968	Right-handed alpha
Helix 42	AE6	A	974	986	Right-handed alpha
Helix 43	AE7	A	988	999	Right-handed alpha
Helix 44	AE8	A	1006	1015	Right-handed alpha
Helix 45	AE9	A	1016	1026	Right-handed alpha
Helix 46	AF1	A	1038	1047	Right-handed alpha
Helix 47	AF2	A	1048	1059	Right-handed alpha
Helix 48	AF3	A	1071	1080	Right-handed alpha
Helix 49	AF4	A	1081	1092	Right-handed alpha
Helix 50	AF5	A	1104	1112	Right-handed alpha
Helix 51	AF6	A	1114	1125	Right-handed alpha
Helix 52	AF7	A	1140	1147	Right-handed alpha
Helix 53	AF8	A	1151	1160	Right-handed alpha
Helix 54	AF9	A	1174	1180	Right-handed alpha
Helix 55	AG1	A	1184	1193	Right-handed alpha
Helix 56	AG2	B	117	182	Right-handed alpha
Helix 57	AG3	B	183	192	Right-handed alpha
Helix 58	AG4	B	196	204	Right-handed alpha
Helix 59	AG5	B	212	223	Right-handed alpha
Helix 60	AG6	B	234	270	Right-handed alpha
Helix 61	AG7	B	272	295	Right-handed alpha
Helix 62	AG8	B	303	319	Right-handed alpha
Helix 63	AG9	B	324	350	Right-handed alpha
Helix 64	AH1	B	454	464	Right-handed alpha
Helix 65	AH2	B	467	481	Right-handed alpha
Helix 66	AH3	B	493	502	Right-handed alpha
Helix 67	AH4	B	504	512	Right-handed alpha
Helix 68	AH5	B	515	520	Right-handed alpha
Helix 69	AH6	B	528	537	Right-handed alpha
Helix 70	AH7	B	538	549	Right-handed alpha
Helix 71	AH8	B	562	571	Right-handed alpha
Helix 72	AH9	B	572	582	Right-handed alpha
Helix 73	AI1	B	597	605	Right-handed alpha
Helix 74	AI2	B	605	615	Right-handed alpha
Helix 75	AI3	B	629	637	Right-handed alpha
Helix 76	AI4	B	639	650	Right-handed alpha
Helix 77	AI5	B	663	672	Right-handed alpha
Helix 78	AI6	B	673	684	Right-handed alpha
Helix 79	AI7	B	698	705	Right-handed alpha
Helix 80	AI8	B	708	718	Right-handed alpha
Helix 81	AI9	B	732	741	Right-handed alpha
Helix 82	AJ1	B	742	753	Right-handed alpha
Helix 83	AJ2	B	765	773	Right-handed alpha
Helix 84	AJ3	B	776	786	Right-handed alpha
Helix 85	AJ4	B	798	806	Right-handed alpha
Helix 86	AJ5	B	808	818	Right-handed alpha
Helix 87	AJ6	B	831	839	Right-handed alpha
Helix 88	AJ7	B	841	852	Right-handed alpha
Helix 89	AJ8	B	853	857	Right-handed 310
Helix 90	AJ9	B	865	874	Right-handed alpha
Helix 91	AK1	B	875	885	Right-handed alpha
Helix 92	AK2	B	898	907	Right-handed alpha
Helix 93	AK3	B	909	918	Right-handed alpha
Helix 94	AK4	B	931	940	Right-handed alpha
Helix 95	AK5	B	942	951	Right-handed alpha
Helix 96	AK6	B	961	968	Right-handed alpha
Helix 97	AK7	B	974	986	Right-handed alpha
Helix 98	AK8	B	988	999	Right-handed alpha
Helix 99	AK9	B	1006	1015	Right-handed alpha
Helix 100	AL1	B	1017	1026	Right-handed alpha
Helix 101	AL2	B	1038	1047	Right-handed alpha
Helix 102	AL3	B	1048	1058	Right-handed alpha
Helix 103	AL4	B	1072	1079	Right-handed alpha
Helix 104	AL5	B	1081	1092	Right-handed alpha
Helix 105	AL6	B	1104	1112	Right-handed alpha
Helix 106	AL7	B	1114	1125	Right-handed alpha
Helix 107	AL8	B	1140	1148	Right-handed alpha
Helix 108	AL9	B	1151	1159	Right-handed alpha
Helix 109	AM1	B	1184	1193	Right-handed alpha
Helix 110	AM2	C	117	181	Right-handed alpha
Helix 111	AM3	C	183	192	Right-handed alpha
Helix 112	AM4	C	196	204	Right-handed alpha
Helix 113	AM5	C	212	223	Right-handed alpha
Helix 114	AM6	C	234	271	Right-handed alpha
Helix 115	AM7	C	272	295	Right-handed alpha
Helix 116	AM8	C	305	320	Right-handed alpha
Helix 117	AM9	C	325	350	Right-handed alpha
Helix 118	AN1	C	453	463	Right-handed alpha
Helix 119	AN2	C	467	481	Right-handed alpha
Helix 120	AN3	C	493	502	Right-handed alpha
Helix 121	AN4	C	503	512	Right-handed alpha
Helix 122	AN5	C	515	520	Right-handed alpha
Helix 123	AN6	C	528	537	Right-handed alpha
Helix 124	AN7	C	539	548	Right-handed alpha
Helix 125	AN8	C	562	571	Right-handed alpha
Helix 126	AN9	C	572	580	Right-handed alpha
Helix 127	AO1	C	596	605	Right-handed alpha
Helix 128	AO2	C	605	615	Right-handed alpha
Helix 129	AO3	C	629	636	Right-handed alpha
Helix 130	AO4	C	639	650	Right-handed alpha
Helix 131	AO5	C	663	672	Right-handed alpha
Helix 132	AO6	C	673	684	Right-handed alpha
Helix 133	AO7	C	698	705	Right-handed alpha
Helix 134	AO8	C	708	718	Right-handed alpha
Helix 135	AO9	C	732	741	Right-handed alpha
Helix 136	AP1	C	742	753	Right-handed alpha
Helix 137	AP2	C	765	772	Right-handed alpha
Helix 138	AP3	C	776	786	Right-handed alpha
Helix 139	AP4	C	798	807	Right-handed alpha
Helix 140	AP5	C	808	818	Right-handed alpha
Helix 141	AP6	C	831	840	Right-handed alpha
Helix 142	AP7	C	842	852	Right-handed alpha
Helix 143	AP8	C	853	858	Right-handed 310
Helix 144	AP9	C	865	874	Right-handed alpha
Helix 145	AQ1	C	875	886	Right-handed alpha
Helix 146	AQ2	C	898	907	Right-handed alpha
Helix 147	AQ3	C	908	918	Right-handed alpha
Helix 148	AQ4	C	931	940	Right-handed alpha
Helix 149	AQ5	C	941	951	Right-handed alpha
Helix 150	AQ6	C	961	968	Right-handed alpha
Helix 151	AQ7	C	974	986	Right-handed alpha
Helix 152	AQ8	C	988	999	Right-handed alpha
Helix 153	AQ9	C	1006	1015	Right-handed alpha
Helix 154	AR1	C	1016	1026	Right-handed alpha
Helix 155	AR2	C	1038	1047	Right-handed alpha
Helix 156	AR3	C	1048	1058	Right-handed alpha
Helix 157	AR4	C	1071	1079	Right-handed alpha
Helix 158	AR5	C	1081	1092	Right-handed alpha
Helix 159	AR6	C	1104	1112	Right-handed alpha
Helix 160	AR7	C	1114	1124	Right-handed alpha
Helix 161	AR8	C	1140	1147	Right-handed alpha
Helix 162	AR9	C	1151	1160	Right-handed alpha
Helix 163	AS1	C	1174	1181	Right-handed alpha
Helix 164	AS2	C	1184	1194	Right-handed alpha
Helix 165	AS3	D	117	181	Right-handed alpha
Helix 166	AS4	D	183	192	Right-handed alpha
Helix 167	AS5	D	196	204	Right-handed alpha
Helix 168	AS6	D	212	223	Right-handed alpha
Helix 169	AS7	D	232	270	Right-handed alpha
Helix 170	AS8	D	272	295	Right-handed alpha
Helix 171	AS9	D	305	320	Right-handed alpha
Helix 172	AT1	D	326	350	Right-handed alpha
Helix 173	AT2	D	457	463	Right-handed alpha
Helix 174	AT3	D	467	481	Right-handed alpha
Helix 175	AT4	D	493	502	Right-handed alpha
Helix 176	AT5	D	504	512	Right-handed alpha
Helix 177	AT6	D	515	520	Right-handed alpha
Helix 178	AT7	D	528	537	Right-handed alpha
Helix 179	AT8	D	539	549	Right-handed alpha
Helix 180	AT9	D	562	571	Right-handed alpha
Helix 181	AU1	D	573	580	Right-handed alpha
Helix 182	AU2	D	596	605	Right-handed alpha
Helix 183	AU3	D	605	614	Right-handed alpha
Helix 184	AU4	D	629	638	Right-handed alpha
Helix 185	AU5	D	639	650	Right-handed alpha
Helix 186	AU6	D	663	672	Right-handed alpha
Helix 187	AU7	D	673	684	Right-handed alpha
Helix 188	AU8	D	698	705	Right-handed alpha
Helix 189	AU9	D	708	718	Right-handed alpha
Helix 190	AV1	D	727	731	Right-handed 310
Helix 191	AV2	D	732	741	Right-handed alpha
Helix 192	AV3	D	742	753	Right-handed alpha
Helix 193	AV4	D	765	772	Right-handed alpha
Helix 194	AV5	D	777	786	Right-handed alpha
Helix 195	AV6	D	798	807	Right-handed alpha
Helix 196	AV7	D	808	818	Right-handed alpha
Helix 197	AV8	D	831	838	Right-handed alpha
Helix 198	AV9	D	841	852	Right-handed alpha
Helix 199	AW1	D	853	858	Right-handed 310
Helix 200	AW2	D	865	873	Right-handed alpha
Helix 201	AW3	D	875	884	Right-handed alpha
Helix 202	AW4	D	898	907	Right-handed alpha
Helix 203	AW5	D	909	918	Right-handed alpha
Helix 204	AW6	D	931	940	Right-handed alpha
Helix 205	AW7	D	941	951	Right-handed alpha
Helix 206	AW8	D	961	968	Right-handed alpha
Helix 207	AW9	D	974	986	Right-handed alpha
Helix 208	AX1	D	989	999	Right-handed alpha
Helix 209	AX2	D	1006	1015	Right-handed alpha
Helix 210	AX3	D	1016	1026	Right-handed alpha
Helix 211	AX4	D	1038	1047	Right-handed alpha
Helix 212	AX5	D	1048	1058	Right-handed alpha
Helix 213	AX6	D	1071	1079	Right-handed alpha
Helix 214	AX7	D	1081	1091	Right-handed alpha
Helix 215	AX8	D	1104	1112	Right-handed alpha
Helix 216	AX9	D	1114	1125	Right-handed alpha
Helix 217	AY1	D	1141	1148	Right-handed alpha
Helix 218	AY2	D	1151	1161	Right-handed alpha
Helix 219	AY3	D	1174	1180	Right-handed alpha
Helix 220	AY4	D	1184	1191	Right-handed alpha

There are 12 sheets in PDB entry 9GOA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	355	first strand
Strand 2	A	396	397	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	364	366	first strand
Strand 2	A	415	417	anti-parallel
Strand 3	A	450	452	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	406	407	first strand
Strand 2	A	383	390	anti-parallel
Strand 3	A	427	433	anti-parallel
Strand 4	A	439	444	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	355	first strand
Strand 2	B	396	397	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	364	366	first strand
Strand 2	B	415	417	anti-parallel
Strand 3	B	450	452	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	406	408	first strand
Strand 2	B	382	390	anti-parallel
Strand 3	B	427	433	anti-parallel
Strand 4	B	439	444	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	355	first strand
Strand 2	C	396	397	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	364	366	first strand
Strand 2	C	415	417	anti-parallel
Strand 3	C	450	452	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	384	390	first strand
Strand 2	C	427	433	anti-parallel
Strand 3	C	439	444	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	354	355	first strand
Strand 2	D	396	397	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	364	366	first strand
Strand 2	D	415	417	anti-parallel
Strand 3	D	450	452	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	384	390	first strand
Strand 2	D	427	433	anti-parallel
Strand 3	D	439	444	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GOA

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GOA