Analysis of interatomic Contacts of Structural Units in PDB entry:
9GOB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GOB entry

There are 11 chains in PDB entry 9GOB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	THR 5	GLU 72
C	GLY 74	PHE 375
F	ALA 17	ALA 40
A	THR 5	GLU 72
A	GLY 74	PHE 375
E	THR 5	GLU 72
E	GLY 74	PHE 375
B	THR 5	GLU 72
B	GLY 74	PHE 375
D	THR 5	GLU 72
D	GLY 74	PHE 375

There are109 helices in PDB entry 9GOB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	55	61	Right-handed alpha
Helix 2	AA2	C	78	92	Right-handed alpha
Helix 3	AA3	C	97	101	Right-handed 310
Helix 4	AA4	C	112	126	Right-handed alpha
Helix 5	AA5	C	137	145	Right-handed alpha
Helix 6	AA6	C	171	175	Right-handed 310
Helix 7	AA7	C	181	194	Right-handed alpha
Helix 8	AA8	C	195	197	Right-handed 310
Helix 9	AA9	C	202	217	Right-handed alpha
Helix 10	AB1	C	222	233	Right-handed alpha
Helix 11	AB2	C	234	237	Right-handed 310
Helix 12	AB3	C	252	260	Right-handed alpha
Helix 13	AB4	C	261	262	Right-handed 310
Helix 14	AB5	C	263	268	Right-handed 310
Helix 15	AB6	C	273	285	Right-handed alpha
Helix 16	AB7	C	289	295	Right-handed alpha
Helix 17	AB8	C	301	305	Right-handed 310
Helix 18	AB9	C	308	321	Right-handed alpha
Helix 19	AC1	C	337	349	Right-handed alpha
Helix 20	AC2	C	350	355	Right-handed 310
Helix 21	AC3	C	359	366	Right-handed alpha
Helix 22	AC4	C	368	373	Right-handed alpha
Helix 23	AC5	F	21	40	Right-handed alpha
Helix 24	AC6	A	55	61	Right-handed alpha
Helix 25	AC7	A	78	92	Right-handed alpha
Helix 26	AC8	A	97	101	Right-handed 310
Helix 27	AC9	A	112	126	Right-handed alpha
Helix 28	AD1	A	137	146	Right-handed alpha
Helix 29	AD2	A	171	175	Right-handed 310
Helix 30	AD3	A	181	194	Right-handed alpha
Helix 31	AD4	A	195	197	Right-handed 310
Helix 32	AD5	A	202	217	Right-handed alpha
Helix 33	AD6	A	222	233	Right-handed alpha
Helix 34	AD7	A	234	237	Right-handed 310
Helix 35	AD8	A	252	260	Right-handed alpha
Helix 36	AD9	A	261	262	Right-handed 310
Helix 37	AE1	A	263	268	Right-handed 310
Helix 38	AE2	A	273	285	Right-handed alpha
Helix 39	AE3	A	289	295	Right-handed alpha
Helix 40	AE4	A	301	305	Right-handed 310
Helix 41	AE5	A	308	321	Right-handed alpha
Helix 42	AE6	A	337	349	Right-handed alpha
Helix 43	AE7	A	350	355	Right-handed 310
Helix 44	AE8	A	359	366	Right-handed alpha
Helix 45	AE9	A	368	373	Right-handed alpha
Helix 46	AF1	E	55	61	Right-handed alpha
Helix 47	AF2	E	78	92	Right-handed alpha
Helix 48	AF3	E	97	101	Right-handed 310
Helix 49	AF4	E	112	126	Right-handed alpha
Helix 50	AF5	E	137	146	Right-handed alpha
Helix 51	AF6	E	181	194	Right-handed alpha
Helix 52	AF7	E	195	197	Right-handed 310
Helix 53	AF8	E	202	217	Right-handed alpha
Helix 54	AF9	E	222	233	Right-handed alpha
Helix 55	AG1	E	234	237	Right-handed 310
Helix 56	AG2	E	252	260	Right-handed alpha
Helix 57	AG3	E	261	262	Right-handed 310
Helix 58	AG4	E	263	268	Right-handed 310
Helix 59	AG5	E	273	285	Right-handed alpha
Helix 60	AG6	E	289	295	Right-handed alpha
Helix 61	AG7	E	301	305	Right-handed 310
Helix 62	AG8	E	308	321	Right-handed alpha
Helix 63	AG9	E	337	349	Right-handed alpha
Helix 64	AH1	E	350	355	Right-handed 310
Helix 65	AH2	E	359	366	Right-handed alpha
Helix 66	AH3	E	368	373	Right-handed alpha
Helix 67	AH4	B	55	61	Right-handed alpha
Helix 68	AH5	B	78	92	Right-handed alpha
Helix 69	AH6	B	97	101	Right-handed 310
Helix 70	AH7	B	112	126	Right-handed alpha
Helix 71	AH8	B	137	146	Right-handed alpha
Helix 72	AH9	B	171	175	Right-handed 310
Helix 73	AI1	B	181	194	Right-handed alpha
Helix 74	AI2	B	195	197	Right-handed 310
Helix 75	AI3	B	202	217	Right-handed alpha
Helix 76	AI4	B	222	233	Right-handed alpha
Helix 77	AI5	B	234	237	Right-handed 310
Helix 78	AI6	B	252	260	Right-handed alpha
Helix 79	AI7	B	261	262	Right-handed 310
Helix 80	AI8	B	263	268	Right-handed 310
Helix 81	AI9	B	273	285	Right-handed alpha
Helix 82	AJ1	B	289	295	Right-handed alpha
Helix 83	AJ2	B	301	305	Right-handed 310
Helix 84	AJ3	B	308	321	Right-handed alpha
Helix 85	AJ4	B	337	349	Right-handed alpha
Helix 86	AJ5	B	350	355	Right-handed 310
Helix 87	AJ6	B	359	366	Right-handed alpha
Helix 88	AJ7	B	368	373	Right-handed alpha
Helix 89	AJ8	D	55	61	Right-handed alpha
Helix 90	AJ9	D	78	92	Right-handed alpha
Helix 91	AK1	D	97	101	Right-handed 310
Helix 92	AK2	D	112	126	Right-handed alpha
Helix 93	AK3	D	137	146	Right-handed alpha
Helix 94	AK4	D	181	194	Right-handed alpha
Helix 95	AK5	D	195	197	Right-handed 310
Helix 96	AK6	D	202	217	Right-handed alpha
Helix 97	AK7	D	222	233	Right-handed alpha
Helix 98	AK8	D	234	237	Right-handed 310
Helix 99	AK9	D	252	260	Right-handed alpha
Helix 100	AL1	D	261	262	Right-handed 310
Helix 101	AL2	D	263	268	Right-handed 310
Helix 102	AL3	D	273	285	Right-handed alpha
Helix 103	AL4	D	289	295	Right-handed alpha
Helix 104	AL5	D	301	305	Right-handed 310
Helix 105	AL6	D	308	321	Right-handed alpha
Helix 106	AL7	D	337	349	Right-handed alpha
Helix 107	AL8	D	350	355	Right-handed 310
Helix 108	AL9	D	359	366	Right-handed alpha
Helix 109	AM1	D	368	373	Right-handed alpha

There are 25 sheets in PDB entry 9GOB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	32	first strand
Strand 2	C	16	21	anti-parallel
Strand 3	C	8	11	anti-parallel
Strand 4	C	103	107	parallel
Strand 5	C	131	136	parallel
Strand 6	C	357	358	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	35	38	anti-parallel
Strand 3	C	65	68	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	72	first strand
Strand 2	C	75	76	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	177	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	149	155	anti-parallel
Strand 4	C	297	300	parallel
Strand 5	C	329	330	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	241	first strand
Strand 2	C	247	250	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	16	21	anti-parallel
Strand 3	A	8	11	anti-parallel
Strand 4	A	103	107	parallel
Strand 5	A	131	136	parallel
Strand 6	A	357	358	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	35	38	anti-parallel
Strand 3	A	65	68	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	75	76	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	177	first strand
Strand 2	A	160	165	anti-parallel
Strand 3	A	150	155	anti-parallel
Strand 4	A	297	300	parallel
Strand 5	A	329	330	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	241	first strand
Strand 2	A	247	250	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	32	first strand
Strand 2	E	16	21	anti-parallel
Strand 3	E	8	11	anti-parallel
Strand 4	E	103	107	parallel
Strand 5	E	131	136	parallel
Strand 6	E	357	358	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	54	first strand
Strand 2	E	35	38	anti-parallel
Strand 3	E	65	68	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	71	72	first strand
Strand 2	E	75	76	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	176	177	first strand
Strand 2	E	160	165	anti-parallel
Strand 3	E	150	155	anti-parallel
Strand 4	E	297	300	parallel
Strand 5	E	329	330	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	238	241	first strand
Strand 2	E	247	250	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	32	first strand
Strand 2	B	16	21	anti-parallel
Strand 3	B	8	11	anti-parallel
Strand 4	B	103	107	parallel
Strand 5	B	131	136	parallel
Strand 6	B	357	358	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	35	38	anti-parallel
Strand 3	B	65	68	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	75	76	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	177	first strand
Strand 2	B	160	165	anti-parallel
Strand 3	B	150	155	anti-parallel
Strand 4	B	297	300	parallel
Strand 5	B	329	330	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	241	first strand
Strand 2	B	247	250	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	32	first strand
Strand 2	D	16	21	anti-parallel
Strand 3	D	8	11	anti-parallel
Strand 4	D	103	107	parallel
Strand 5	D	131	136	parallel
Strand 6	D	357	358	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	35	38	anti-parallel
Strand 3	D	65	68	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	72	first strand
Strand 2	D	75	76	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	176	177	first strand
Strand 2	D	160	165	anti-parallel
Strand 3	D	150	155	anti-parallel
Strand 4	D	297	300	parallel
Strand 5	D	329	330	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	241	first strand
Strand 2	D	247	250	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GOB

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GOB