Analysis of interatomic Contacts of Structural Units in PDB entry:
9GOE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GOE entry

There are 2 chains in PDB entry 9GOE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 34ALA 872
B
 GLY 1VAL 119
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 9GOE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 56Right-handed alpha
Helix 2
AA2
A
60 70Right-handed alpha
Helix 3
AA3
A
72 102Right-handed alpha
Helix 4
AA4
A
106 124Right-handed alpha
Helix 5
AA5
A
130 143Right-handed alpha
Helix 6
AA6
A
145 184Right-handed alpha
Helix 7
AA7
A
186 204Right-handed alpha
Helix 8
AA8
A
236 261Right-handed alpha
Helix 9
AA9
A
267 285Right-handed alpha
Helix 10
AB1
A
286 289Right-handed 310
Helix 11
AB2
A
290 302Right-handed alpha
Helix 12
AB3
A
307 323Right-handed alpha
Helix 13
AB4
A
323 342Right-handed alpha
Helix 14
AB5
A
355 377Right-handed alpha
Helix 15
AB6
A
380 389Right-handed alpha
Helix 16
AB7
A
392 419Right-handed alpha
Helix 17
AB8
A
421 442Right-handed alpha
Helix 18
AB9
A
445 462Right-handed alpha
Helix 19
AC1
A
463 466Right-handed 310
Helix 20
AC2
A
471 475Right-handed 310
Helix 21
AC3
A
478 500Right-handed alpha
Helix 22
AC4
A
507 512Right-handed alpha
Helix 23
AC5
A
518 542Right-handed alpha
Helix 24
AC6
A
553 567Right-handed alpha
Helix 25
AC7
A
569 578Right-handed 310
Helix 26
AC8
A
610 628Right-handed alpha
Helix 27
AC9
A
638 640Right-handed 310
Helix 28
AD1
A
641 648Right-handed alpha
Helix 29
AD2
A
672 689Right-handed alpha
Helix 30
AD3
A
702 714Right-handed alpha
Helix 31
AD4
A
729 736Right-handed alpha
Helix 32
AD5
A
775 793Right-handed alpha
Helix 33
AD6
A
839 844Right-handed 310
Helix 34
AD7
A
859 872Right-handed alpha
Helix 35
AD8
B
87 91Right-handed 310
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There are 7 sheets in PDB entry 9GOE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 226first strand
Strand 2
A
232 234anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
581 582first strand
Strand 2
A
593 597anti-parallel
Strand 3
A
600 603anti-parallel
Strand 4
A
631 633parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
650 651first strand
Strand 2
A
854 855anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
692 695first strand
Strand 2
A
737 743anti-parallel
Strand 3
A
746 754anti-parallel
Strand 4
A
761 769anti-parallel
Strand 5
A
796 803parallel
Strand 6
A
654 662anti-parallel
Strand 7
A
846 851anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
19 24anti-parallel
Strand 3
B
79 82anti-parallel
Strand 4
B
71 72anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 51first strand
Strand 2
B
34 39anti-parallel
Strand 3
B
96 98anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 94first strand
Strand 2
B
115 117anti-parallel
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