Analysis of interatomic Contacts of Structural Units in PDB entry:
9GOF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GOF entry

There are 3 chains in PDB entry 9GOF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TRP 39	PRO 394
B	TRP 39	PRO 394
C	TRP 39	THR 392

There are 27 helices in PDB entry 9GOF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	57	61	Right-handed 310
Helix 2	AA2	A	169	173	Right-handed 310
Helix 3	AA3	A	176	182	Right-handed alpha
Helix 4	AA4	A	184	193	Right-handed alpha
Helix 5	AA5	A	195	200	Right-handed alpha
Helix 6	AA6	A	218	222	Right-handed 310
Helix 7	AA7	A	355	361	Right-handed alpha
Helix 8	AA8	A	363	372	Right-handed alpha
Helix 9	AA9	A	374	379	Right-handed alpha
Helix 10	AB1	B	57	61	Right-handed 310
Helix 11	AB2	B	169	173	Right-handed 310
Helix 12	AB3	B	176	182	Right-handed alpha
Helix 13	AB4	B	184	193	Right-handed alpha
Helix 14	AB5	B	195	200	Right-handed alpha
Helix 15	AB6	B	218	222	Right-handed 310
Helix 16	AB7	B	355	361	Right-handed alpha
Helix 17	AB8	B	363	372	Right-handed alpha
Helix 18	AB9	B	374	379	Right-handed alpha
Helix 19	AC1	C	57	61	Right-handed 310
Helix 20	AC2	C	169	173	Right-handed 310
Helix 21	AC3	C	176	182	Right-handed alpha
Helix 22	AC4	C	184	193	Right-handed alpha
Helix 23	AC5	C	195	200	Right-handed alpha
Helix 24	AC6	C	218	222	Right-handed 310
Helix 25	AC7	C	355	361	Right-handed alpha
Helix 26	AC8	C	363	372	Right-handed alpha
Helix 27	AC9	C	374	379	Right-handed alpha

There are 18 sheets in PDB entry 9GOF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	56	first strand
Strand 2	A	320	323	anti-parallel
Strand 3	A	290	296	anti-parallel
Strand 4	A	339	345	anti-parallel
Strand 5	A	268	274	anti-parallel
Strand 6	A	251	256	anti-parallel
Strand 7	A	246	248	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	66	first strand
Strand 2	A	69	74	anti-parallel
Strand 3	A	86	92	anti-parallel
Strand 4	A	157	163	anti-parallel
Strand 5	A	108	114	anti-parallel
Strand 6	A	137	141	anti-parallel
Strand 7	A	236	238	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	134	first strand
Strand 2	A	116	122	anti-parallel
Strand 3	A	146	152	anti-parallel
Strand 4	A	97	102	anti-parallel
Strand 5	A	174	175	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	134	first strand
Strand 2	A	116	122	anti-parallel
Strand 3	A	146	152	anti-parallel
Strand 4	A	97	102	anti-parallel
Strand 5	A	209	210	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	310	315	first strand
Strand 2	A	299	304	anti-parallel
Strand 3	A	328	332	anti-parallel
Strand 4	A	279	284	anti-parallel
Strand 5	A	353	354	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	310	315	first strand
Strand 2	A	299	304	anti-parallel
Strand 3	A	328	332	anti-parallel
Strand 4	A	279	284	anti-parallel
Strand 5	A	388	389	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	56	first strand
Strand 2	B	320	323	anti-parallel
Strand 3	B	290	296	anti-parallel
Strand 4	B	339	345	anti-parallel
Strand 5	B	268	274	anti-parallel
Strand 6	B	251	256	anti-parallel
Strand 7	B	246	248	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	66	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	86	92	anti-parallel
Strand 4	B	157	163	anti-parallel
Strand 5	B	108	114	anti-parallel
Strand 6	B	137	141	anti-parallel
Strand 7	B	236	238	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	134	first strand
Strand 2	B	116	122	anti-parallel
Strand 3	B	146	151	anti-parallel
Strand 4	B	97	102	anti-parallel
Strand 5	B	174	175	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	134	first strand
Strand 2	B	116	122	anti-parallel
Strand 3	B	146	151	anti-parallel
Strand 4	B	97	102	anti-parallel
Strand 5	B	209	210	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	310	315	first strand
Strand 2	B	299	304	anti-parallel
Strand 3	B	328	332	anti-parallel
Strand 4	B	279	284	anti-parallel
Strand 5	B	353	354	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	310	315	first strand
Strand 2	B	299	304	anti-parallel
Strand 3	B	328	332	anti-parallel
Strand 4	B	279	284	anti-parallel
Strand 5	B	388	389	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	56	first strand
Strand 2	C	320	323	anti-parallel
Strand 3	C	290	296	anti-parallel
Strand 4	C	339	345	anti-parallel
Strand 5	C	268	274	anti-parallel
Strand 6	C	251	256	anti-parallel
Strand 7	C	246	248	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	66	first strand
Strand 2	C	69	74	anti-parallel
Strand 3	C	86	92	anti-parallel
Strand 4	C	157	163	anti-parallel
Strand 5	C	108	114	anti-parallel
Strand 6	C	137	141	anti-parallel
Strand 7	C	236	238	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	134	first strand
Strand 2	C	116	122	anti-parallel
Strand 3	C	146	152	anti-parallel
Strand 4	C	97	102	anti-parallel
Strand 5	C	174	175	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	134	first strand
Strand 2	C	116	122	anti-parallel
Strand 3	C	146	152	anti-parallel
Strand 4	C	97	102	anti-parallel
Strand 5	C	209	210	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	310	315	first strand
Strand 2	C	299	304	anti-parallel
Strand 3	C	328	332	anti-parallel
Strand 4	C	279	284	anti-parallel
Strand 5	C	353	354	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	310	315	first strand
Strand 2	C	299	304	anti-parallel
Strand 3	C	328	332	anti-parallel
Strand 4	C	279	284	anti-parallel
Strand 5	C	388	389	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GOF

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GOF