Analysis of interatomic Contacts of Structural Units in PDB entry:
9GOQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GOQ entry

There are 18 chains in PDB entry 9GOQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 140THR 237
a
 ARG 9MET 147
B
 THR 140THR 237
C
 THR 140THR 237
D
 THR 140THR 237
E
 THR 140THR 237
F
 THR 140THR 237
b
 ARG 9MET 147
c
 ARG 9MET 147
d
 ARG 9MET 147
e
 ARG 9MET 147
f
 ARG 9MET 147
g
 ASN 412GLN 464
h
 ASN 412GLN 464
i
 ASN 412GLN 464
l
 ASN 412GLN 464
m
 ASN 412GLN 464
n
 ASN 412GLN 464
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 88 helices in PDB entry 9GOQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
149 160Right-handed alpha
Helix 2
AA2
A
189 201Right-handed alpha
Helix 3
AA3
A
210 218Right-handed alpha
Helix 4
AA4
A
225 234Right-handed alpha
Helix 5
AA5
a
11 24Right-handed alpha
Helix 6
AA6
a
30 39Right-handed alpha
Helix 7
AA7
a
44 53Right-handed alpha
Helix 8
AA8
a
56 68Right-handed alpha
Helix 9
AA9
a
81 95Right-handed alpha
Helix 10
AB1
a
104 115Right-handed alpha
Helix 11
AB2
a
118 127Right-handed alpha
Helix 12
AB3
a
130 143Right-handed alpha
Helix 13
AB4
B
149 160Right-handed alpha
Helix 14
AB5
B
189 201Right-handed alpha
Helix 15
AB6
B
210 218Right-handed alpha
Helix 16
AB7
B
225 234Right-handed alpha
Helix 17
AB8
C
149 160Right-handed alpha
Helix 18
AB9
C
189 201Right-handed alpha
Helix 19
AC1
C
210 218Right-handed alpha
Helix 20
AC2
C
225 234Right-handed alpha
Helix 21
AC3
D
149 159Right-handed alpha
Helix 22
AC4
D
189 201Right-handed alpha
Helix 23
AC5
D
210 218Right-handed alpha
Helix 24
AC6
D
225 234Right-handed alpha
Helix 25
AC7
E
149 160Right-handed alpha
Helix 26
AC8
E
189 201Right-handed alpha
Helix 27
AC9
E
210 218Right-handed alpha
Helix 28
AD1
E
225 234Right-handed alpha
Helix 29
AD2
F
149 160Right-handed alpha
Helix 30
AD3
F
189 201Right-handed alpha
Helix 31
AD4
F
210 218Right-handed alpha
Helix 32
AD5
F
225 234Right-handed alpha
Helix 33
AD6
b
10 14Right-handed 310
Helix 34
AD7
b
16 24Right-handed alpha
Helix 35
AD8
b
30 40Right-handed alpha
Helix 36
AD9
b
44 53Right-handed alpha
Helix 37
AE1
b
56 68Right-handed alpha
Helix 38
AE2
b
81 95Right-handed alpha
Helix 39
AE3
b
104 115Right-handed alpha
Helix 40
AE4
b
118 127Right-handed alpha
Helix 41
AE5
b
130 143Right-handed alpha
Helix 42
AE6
c
10 24Right-handed alpha
Helix 43
AE7
c
30 40Right-handed alpha
Helix 44
AE8
c
44 53Right-handed alpha
Helix 45
AE9
c
56 68Right-handed alpha
Helix 46
AF1
c
81 95Right-handed alpha
Helix 47
AF2
c
104 115Right-handed alpha
Helix 48
AF3
c
117 127Right-handed alpha
Helix 49
AF4
c
130 143Right-handed alpha
Helix 50
AF5
d
11 24Right-handed alpha
Helix 51
AF6
d
30 40Right-handed alpha
Helix 52
AF7
d
44 53Right-handed alpha
Helix 53
AF8
d
56 68Right-handed alpha
Helix 54
AF9
d
81 95Right-handed alpha
Helix 55
AG1
d
96 98Right-handed 310
Helix 56
AG2
d
104 115Right-handed alpha
Helix 57
AG3
d
118 127Right-handed alpha
Helix 58
AG4
d
130 143Right-handed alpha
Helix 59
AG5
e
11 24Right-handed alpha
Helix 60
AG6
e
30 39Right-handed alpha
Helix 61
AG7
e
44 53Right-handed alpha
Helix 62
AG8
e
56 68Right-handed alpha
Helix 63
AG9
e
81 99Right-handed alpha
Helix 64
AH1
e
104 115Right-handed alpha
Helix 65
AH2
e
118 127Right-handed alpha
Helix 66
AH3
e
130 143Right-handed alpha
Helix 67
AH4
f
11 25Right-handed alpha
Helix 68
AH5
f
30 40Right-handed alpha
Helix 69
AH6
f
44 53Right-handed alpha
Helix 70
AH7
f
56 68Right-handed alpha
Helix 71
AH8
f
81 95Right-handed alpha
Helix 72
AH9
f
96 98Right-handed 310
Helix 73
AI1
f
104 115Right-handed alpha
Helix 74
AI2
f
118 127Right-handed alpha
Helix 75
AI3
f
130 143Right-handed alpha
Helix 76
AI4
g
416 433Right-handed alpha
Helix 77
AI5
g
435 464Right-handed alpha
Helix 78
AI6
h
416 433Right-handed alpha
Helix 79
AI7
h
435 464Right-handed alpha
Helix 80
AI8
i
416 433Right-handed alpha
Helix 81
AI9
i
435 463Right-handed alpha
Helix 82
AJ1
l
416 433Right-handed alpha
Helix 83
AJ2
l
435 464Right-handed alpha
Helix 84
AJ3
m
412 415Right-handed 310
Helix 85
AJ4
m
416 433Right-handed alpha
Helix 86
AJ5
m
435 464Right-handed alpha
Helix 87
AJ6
n
414 433Right-handed alpha
Helix 88
AJ7
n
435 463Right-handed alpha
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There are 7 sheets in PDB entry 9GOQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 206first strand
Strand 2
A
142 147anti-parallel
Strand 3
A
177 184anti-parallel
Strand 4
A
167 174anti-parallel
Strand 5
A
219 223anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
205 206first strand
Strand 2
B
142 147anti-parallel
Strand 3
B
177 184anti-parallel
Strand 4
B
167 174anti-parallel
Strand 5
B
219 223anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
205 206first strand
Strand 2
C
142 147anti-parallel
Strand 3
C
177 184anti-parallel
Strand 4
C
167 174anti-parallel
Strand 5
C
219 223anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
205 206first strand
Strand 2
D
142 147anti-parallel
Strand 3
D
177 184anti-parallel
Strand 4
D
167 174anti-parallel
Strand 5
D
219 223anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
205 206first strand
Strand 2
E
142 147anti-parallel
Strand 3
E
177 184anti-parallel
Strand 4
E
167 174anti-parallel
Strand 5
E
219 223anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
205 206first strand
Strand 2
F
142 147anti-parallel
Strand 3
F
177 184anti-parallel
Strand 4
F
167 174anti-parallel
Strand 5
F
219 223anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
e
28 29first strand
Strand 2
e
79 80parallel
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