Analysis of interatomic Contacts of Structural Units in PDB entry:
9GOY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GOY entry

There are 3 chains in PDB entry 9GOY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TRP 46	ASN 290
H	GLN 1	LYS 214
L	GLU 1	GLY 212

There are 19 helices in PDB entry 9GOY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	58	74	Right-handed alpha
Helix 2	AA2	A	75	78	Right-handed 310
Helix 3	AA3	A	81	94	Right-handed alpha
Helix 4	AA4	A	106	113	Right-handed alpha
Helix 5	AA5	A	128	139	Right-handed alpha
Helix 6	AA6	A	144	147	Right-handed 310
Helix 7	AA7	A	148	155	Right-handed alpha
Helix 8	AA8	A	183	200	Right-handed alpha
Helix 9	AA9	A	220	225	Right-handed alpha
Helix 10	AB1	A	226	230	Right-handed 310
Helix 11	AB2	A	256	268	Right-handed alpha
Helix 12	AB3	A	280	290	Right-handed alpha
Helix 13	AB4	H	83	87	Right-handed 310
Helix 14	AB5	H	127	131	Right-handed 310
Helix 15	AB6	H	187	190	Right-handed 310
Helix 16	AB7	H	201	204	Right-handed 310
Helix 17	AB8	L	79	83	Right-handed 310
Helix 18	AB9	L	121	128	Right-handed alpha
Helix 19	AC1	L	183	189	Right-handed alpha

There are 13 sheets in PDB entry 9GOY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	53	first strand
Strand 2	A	172	173	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	125	first strand
Strand 2	A	202	209	parallel
Strand 3	A	235	243	parallel
Strand 4	A	272	278	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	96	anti-parallel
Strand 4	H	34	40	anti-parallel
Strand 5	H	44	52	anti-parallel
Strand 6	H	56	59	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	96	anti-parallel
Strand 4	H	100	103	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	120	124	first strand
Strand 2	H	135	145	anti-parallel
Strand 3	H	176	185	anti-parallel
Strand 4	H	163	165	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	120	124	first strand
Strand 2	H	135	145	anti-parallel
Strand 3	H	176	185	anti-parallel
Strand 4	H	169	170	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	151	154	first strand
Strand 2	H	195	200	anti-parallel
Strand 3	H	205	210	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	97	98	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	129	139	anti-parallel
Strand 3	L	173	182	anti-parallel
Strand 4	L	159	160	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	145	150	first strand
Strand 2	L	192	197	anti-parallel
Strand 3	L	205	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GOY

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GOY