Analysis of interatomic Contacts of Structural Units in PDB entry:
9GP8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GP8 entry

There is 1 chain in PDB entry 9GP8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 759
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 9GP8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 46Right-handed 310
Helix 2
AA2
A
47 54Right-handed alpha
Helix 3
AA3
A
91 103Right-handed alpha
Helix 4
AA4
A
115 124Right-handed alpha
Helix 5
AA5
A
186 202Right-handed alpha
Helix 6
AA6
A
214 226Right-handed alpha
Helix 7
AA7
A
260 266Right-handed alpha
Helix 8
AA8
A
274 281Right-handed alpha
Helix 9
AA9
A
291 301Right-handed alpha
Helix 10
AB1
A
304 338Right-handed alpha
Helix 11
AB2
A
340 345Right-handed alpha
Helix 12
AB3
A
348 364Right-handed alpha
Helix 13
AB4
A
373 380Right-handed alpha
Helix 14
AB5
A
407 416Right-handed alpha
Helix 15
AB6
A
419 423Right-handed 310
Helix 16
AB7
A
447 470Right-handed alpha
Helix 17
AB8
A
472 492Right-handed alpha
Helix 18
AB9
A
492 499Right-handed alpha
Helix 19
AC1
A
506 533Right-handed alpha
Helix 20
AC2
A
552 569Right-handed alpha
Helix 21
AC3
A
617 632Right-handed alpha
Helix 22
AC4
A
635 652Right-handed alpha
Helix 23
AC5
A
677 688Right-handed alpha
Helix 24
AC6
A
728 736Right-handed alpha
Helix 25
AC7
A
736 747Right-handed alpha
Helix 26
AC8
A
751 756Right-handed 310
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There are 7 sheets in PDB entry 9GP8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 10first strand
Strand 2
A
13 22anti-parallel
Strand 3
A
25 31anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 75first strand
Strand 2
A
78 86anti-parallel
Strand 3
A
37 42anti-parallel
Strand 4
A
106 110anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 183first strand
Strand 2
A
168 172parallel
Strand 3
A
157 163anti-parallel
Strand 4
A
137 144anti-parallel
Strand 5
A
205 208parallel
Strand 6
A
256 259parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 243first strand
Strand 2
A
248 251anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
389 390first strand
Strand 2
A
535 540anti-parallel
Strand 3
A
543 547anti-parallel
Strand 4
A
396 405anti-parallel
Strand 5
A
577 590anti-parallel
Strand 6
A
593 598anti-parallel
Strand 7
A
603 606anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
431 433first strand
Strand 2
A
440 442anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
615 616first strand
Strand 2
A
662 666anti-parallel
Strand 3
A
696 703anti-parallel
Strand 4
A
714 715anti-parallel
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